Tutorial setup
If you have not done the prior sections, you’ll need to set Spack up like this:
git clone https://github.com/spack/spack
. spack/share/spack/setup-env.sh
spack tutorial
See the Basic Installation Tutorial for full details on setup. For more
help join us in the #tutorial
channel on Slack – get an
invitation at spackpm.herokuapp.com
Developer Workflows Tutorial¶
This tutorial will guide you through the process of using the spack
develop
command to develop software from local source code within a
spack environment. With this command spack will manage your
dependencies while you focus on testing changes to your library and/or
application.
Installing from local source¶
The spack install
command, as you know, fetches source code from a
mirror or the internet before building and installing your package. As
developers, we want to build from local source, which we will
constantly change, build, and test.
Let’s imagine for a second we’re working on scr
. scr
is a
library used to implement scalable checkpointing in application
codes. It supports writing/reading checkpoints quickly and efficiently
using MPI and high-bandwidth file I/O. We’d like to test changes to
scr within an actual application so we’ll test with macsio
, a
proxy application written to mimic typical HPC I/O workloads. We’ve
chosen scr
and macsio
because together they are quick to
build.
We’ll start by making an environment for our development. We need to
build macsio
with scr
support, and we’d like everything to be
built without fortran support for the time being. Let’s set up that
development workflow.
$ cd ~
$ mkdir devel-env
$ cd devel-env
$ spack env create -d .
==> Updating view at /home/spack/devel-env/.spack-env/view
==> Created environment in /home/spack/devel-env
==> You can activate this environment with:
==> spack env activate /home/spack/devel-env
$ spacktivate .
$ for now, disable fortran support in all packages
$ spack config add "packages:all:variants: ~fortran"
$ spack add macsio+scr
==> Adding macsio+scr to environment /home/spack/devel-env
==> Updating view at /home/spack/devel-env/.spack-env/view
$ spack install
==> Concretized macsio+scr
- lbkg732 macsio@1.1%gcc@7.5.0~exodus~hdf5~ipo+mpi~pdb+scr+silo~szip~typhonio~zfp~zlib build_type=RelWithDebInfo patches=59479b946e5bbf677e814dc1cde12b38dd3b083fec8c543fc6d3abf9f73dbbfa arch=linux-ubuntu18.04-x86_64
[+] bltycqw ^cmake@3.18.4%gcc@7.5.0~doc+ncurses+openssl+ownlibs~qt patches=bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-ubuntu18.04-x86_64
[+] crhlefo ^ncurses@6.2%gcc@7.5.0~symlinks+termlib arch=linux-ubuntu18.04-x86_64
[+] 4sh6pym ^pkgconf@1.7.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] es377uq ^openssl@1.1.1h%gcc@7.5.0+systemcerts arch=linux-ubuntu18.04-x86_64
[+] zfdvt2j ^perl@5.32.0%gcc@7.5.0+cpanm+shared+threads arch=linux-ubuntu18.04-x86_64
[+] 4ihuiaz ^berkeley-db@18.1.40%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] 4av4gyw ^gdbm@1.18.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] t54jzdy ^readline@8.0%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] smoyzzo ^zlib@1.2.11%gcc@7.5.0+optimize+pic+shared arch=linux-ubuntu18.04-x86_64
- 7tkgwjv ^json-cwx@0.12%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] mm33a3o ^autoconf@2.69%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] mkc3u4x ^m4@1.4.18%gcc@7.5.0+sigsegv patches=3877ab548f88597ab2327a2230ee048d2d07ace1062efe81fc92e91b7f39cd00,fc9b61654a3ba1a8d6cd78ce087e7c96366c290bc8d2c299f09828d793b853c8 arch=linux-ubuntu18.04-x86_64
[+] lbrx7ln ^libsigsegv@2.12%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] d2krmb5 ^automake@1.16.2%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] jdxbjft ^libtool@2.4.6%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] pmsyupw ^openmpi@3.1.6%gcc@7.5.0~atomics~cuda~cxx~cxx_exceptions+gpfs~java~legacylaunchers~lustre~memchecker~pmi~singularity~sqlite3+static~thread_multiple+vt+wrapper-rpath fabrics=none schedulers=none arch=linux-ubuntu18.04-x86_64
[+] zqwfzhw ^hwloc@1.11.11%gcc@7.5.0~cairo~cuda~gl~libudev+libxml2~netloc~nvml+pci+shared arch=linux-ubuntu18.04-x86_64
[+] bob4o5m ^libpciaccess@0.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] gs6ag7k ^util-macros@1.19.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] yn2r3wf ^libxml2@2.9.10%gcc@7.5.0~python arch=linux-ubuntu18.04-x86_64
[+] jearpk4 ^libiconv@1.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] komekkm ^xz@5.2.5%gcc@7.5.0~pic arch=linux-ubuntu18.04-x86_64
[+] wbqbc5v ^numactl@2.0.14%gcc@7.5.0 patches=4e1d78cbbb85de625bad28705e748856033eaafab92a66dffd383a3d7e00cc94 arch=linux-ubuntu18.04-x86_64
- sqm6ik6 ^scr@2.0.0%gcc@7.5.0+dtcmp~fortran~ipo+libyogrt async_api=NONE build_type=RelWithDebInfo cache_base=/tmp cntl_base=/tmp copy_config=none file_lock=FLOCK resource_manager=SLURM scr_config=scr.conf arch=linux-ubuntu18.04-x86_64
- fxiami4 ^dtcmp@1.1.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
- tzf27nc ^lwgrp@1.0.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
- ld352tm ^libyogrt@1.24%gcc@7.5.0~static scheduler=system arch=linux-ubuntu18.04-x86_64
- pv3zp64 ^pdsh@2.31%gcc@7.5.0+ssh+static_modules arch=linux-ubuntu18.04-x86_64
- vfrf7as ^silo@4.10.2%gcc@7.5.0~fortran+mpi+pic+shared~silex patches=7b5a1dc2a0e358e667088d77e7caa780967fa8ea60be89c44986605df9990abe arch=linux-ubuntu18.04-x86_64
[+] vedchc5 ^hdf5@1.10.7%gcc@7.5.0~cxx~debug~fortran~hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-ubuntu18.04-x86_64
==> Installing environment /home/spack/devel-env
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v
==> Installing libyogrt-1.24-ld352tmlkqdjwucj2u5g4fktj2ab2xte
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/libyogrt-1.24/linux-ubuntu18.04-x86_64-gcc-7.5.0-libyogrt-1.24-ld352tmlkqdjwucj2u5g4fktj2ab2xte.spack
################################################################################################ 100.0%
==> Extracting libyogrt-1.24-ld352tmlkqdjwucj2u5g4fktj2ab2xte from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libyogrt-1.24-ld352tmlkqdjwucj2u5g4fktj2ab2xte
==> Installing pdsh-2.31-pv3zp64j5luhresoommun73mk5joqpb5
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/pdsh-2.31/linux-ubuntu18.04-x86_64-gcc-7.5.0-pdsh-2.31-pv3zp64j5luhresoommun73mk5joqpb5.spack
################################################################################################ 100.0%
==> Extracting pdsh-2.31-pv3zp64j5luhresoommun73mk5joqpb5 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pdsh-2.31-pv3zp64j5luhresoommun73mk5joqpb5
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openssl-1.1.1h-es377uqsqougfc67jyg7yfjyyuukin52
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/numactl-2.0.14-wbqbc5vw5sxzwhvu56p6x5nd5n4abrvh
==> Installing json-cwx-0.12-7tkgwjvu2mi4ea2wsdetunq7g4k4r2nh
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/json-cwx-0.12/linux-ubuntu18.04-x86_64-gcc-7.5.0-json-cwx-0.12-7tkgwjvu2mi4ea2wsdetunq7g4k4r2nh.spack
################################################################################################ 100.0%
==> Extracting json-cwx-0.12-7tkgwjvu2mi4ea2wsdetunq7g4k4r2nh from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/json-cwx-0.12-7tkgwjvu2mi4ea2wsdetunq7g4k4r2nh
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-1.11.11-zqwfzhw5k2ollygh6nrjpsi7u4d4g6lu
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-3.1.6-pmsyupw6w3gql4loaor25gfumlmvkl25
==> Installing lwgrp-1.0.3-tzf27ncg7jccpnayixks4hlam3wpv4wy
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/lwgrp-1.0.3/linux-ubuntu18.04-x86_64-gcc-7.5.0-lwgrp-1.0.3-tzf27ncg7jccpnayixks4hlam3wpv4wy.spack
################################################################################################ 100.0%
==> Extracting lwgrp-1.0.3-tzf27ncg7jccpnayixks4hlam3wpv4wy from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/lwgrp-1.0.3-tzf27ncg7jccpnayixks4hlam3wpv4wy
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-vedchc5aoqyu3ydbp346qrbpe6kg46rq
==> Installing dtcmp-1.1.1-fxiami4ydeszdv55txp4zfin3kzfvpc7
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/dtcmp-1.1.1/linux-ubuntu18.04-x86_64-gcc-7.5.0-dtcmp-1.1.1-fxiami4ydeszdv55txp4zfin3kzfvpc7.spack
################################################################################################ 100.0%
==> Extracting dtcmp-1.1.1-fxiami4ydeszdv55txp4zfin3kzfvpc7 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/dtcmp-1.1.1-fxiami4ydeszdv55txp4zfin3kzfvpc7
==> Installing silo-4.10.2-vfrf7asfclt7epufnoxibfqbkntbk5k3
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/silo-4.10.2/linux-ubuntu18.04-x86_64-gcc-7.5.0-silo-4.10.2-vfrf7asfclt7epufnoxibfqbkntbk5k3.spack
################################################################################################ 100.0%
==> Extracting silo-4.10.2-vfrf7asfclt7epufnoxibfqbkntbk5k3 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/silo-4.10.2-vfrf7asfclt7epufnoxibfqbkntbk5k3
==> Installing scr-2.0.0-sqm6ik6bttfz52bgcfhvgucuwegiucqz
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/scr-2.0.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-scr-2.0.0-sqm6ik6bttfz52bgcfhvgucuwegiucqz.spack
################################################################################################ 100.0%
==> Extracting scr-2.0.0-sqm6ik6bttfz52bgcfhvgucuwegiucqz from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/scr-2.0.0-sqm6ik6bttfz52bgcfhvgucuwegiucqz
==> Installing macsio-1.1-lbkg732hoehcrvf6o3sfoi2pz7ie3c4o
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/macsio-1.1/linux-ubuntu18.04-x86_64-gcc-7.5.0-macsio-1.1-lbkg732hoehcrvf6o3sfoi2pz7ie3c4o.spack
################################################################################################ 100.0%
==> Extracting macsio-1.1-lbkg732hoehcrvf6o3sfoi2pz7ie3c4o from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/macsio-1.1-lbkg732hoehcrvf6o3sfoi2pz7ie3c4o
==> Updating view at /home/spack/devel-env/.spack-env/view
==> Updating view at /home/spack/devel-env/.spack-env/view
Before we do any work, we verify that this all builds. Spack ends up building the entire development tree below, and links everything together for you.
Now we are ready to begin work on the actual application.
Development iteration cycles¶
Let’s assume that scr has a bug, and we’d like to patch scr to find out what the problem is. First, we tell spack that we’d like to check out a development version of scr:
$ spack develop scr@2.0.0
==> Configuring spec scr@2.0.0 for development at path scr
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/47/471978ae0afb56a20847d3989b994fbd680d1dea21e77a5a46a964b6e3deed6b.tar.gz
################################################################################################ 100.0%
==> Updating view at /home/spack/devel-env/.spack-env/view
$ grep -3 develop: spack.yaml
packages:
all:
variants: ~fortran
develop:
scr:
spec: scr@2.0.0
The spack develop command marks the package as being a “development”
package in the spack.yaml. This adds a special dev_path=
attribute
to the spec for the package, so spack remembers where the source code
for this package is located. The develop command also downloads/checks
out the source code for the package. By default, the source code is
downloaded into a subdirectory of the environment. You can change the
location of this source directory by modifying the path:
attribute
of the develop configuration in the environment.
There are a two gotchas with the spack develop command
You need to manually specify the package version when specifying a package as a dev package. Spack needs to know the version of the dev package so it can supply the correct flags for the package’s build system.
You’ll need to re-concretize the environment so that the version number and the
dev_path=
attributes are properly added to the cached spec inspack.lock
.
$ spack concretize -f
==> Concretized macsio+scr
- 6x6pqmr macsio@1.1%gcc@7.5.0~exodus~hdf5~ipo+mpi~pdb+scr+silo~szip~typhonio~zfp~zlib build_type=RelWithDebInfo patches=59479b946e5bbf677e814dc1cde12b38dd3b083fec8c543fc6d3abf9f73dbbfa arch=linux-ubuntu18.04-x86_64
[+] bltycqw ^cmake@3.18.4%gcc@7.5.0~doc+ncurses+openssl+ownlibs~qt patches=bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-ubuntu18.04-x86_64
[+] crhlefo ^ncurses@6.2%gcc@7.5.0~symlinks+termlib arch=linux-ubuntu18.04-x86_64
[+] 4sh6pym ^pkgconf@1.7.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] es377uq ^openssl@1.1.1h%gcc@7.5.0+systemcerts arch=linux-ubuntu18.04-x86_64
[+] zfdvt2j ^perl@5.32.0%gcc@7.5.0+cpanm+shared+threads arch=linux-ubuntu18.04-x86_64
[+] 4ihuiaz ^berkeley-db@18.1.40%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] 4av4gyw ^gdbm@1.18.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] t54jzdy ^readline@8.0%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] smoyzzo ^zlib@1.2.11%gcc@7.5.0+optimize+pic+shared arch=linux-ubuntu18.04-x86_64
[+] 7tkgwjv ^json-cwx@0.12%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] mm33a3o ^autoconf@2.69%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] mkc3u4x ^m4@1.4.18%gcc@7.5.0+sigsegv patches=3877ab548f88597ab2327a2230ee048d2d07ace1062efe81fc92e91b7f39cd00,fc9b61654a3ba1a8d6cd78ce087e7c96366c290bc8d2c299f09828d793b853c8 arch=linux-ubuntu18.04-x86_64
[+] lbrx7ln ^libsigsegv@2.12%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] d2krmb5 ^automake@1.16.2%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] jdxbjft ^libtool@2.4.6%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] pmsyupw ^openmpi@3.1.6%gcc@7.5.0~atomics~cuda~cxx~cxx_exceptions+gpfs~java~legacylaunchers~lustre~memchecker~pmi~singularity~sqlite3+static~thread_multiple+vt+wrapper-rpath fabrics=none schedulers=none arch=linux-ubuntu18.04-x86_64
[+] zqwfzhw ^hwloc@1.11.11%gcc@7.5.0~cairo~cuda~gl~libudev+libxml2~netloc~nvml+pci+shared arch=linux-ubuntu18.04-x86_64
[+] bob4o5m ^libpciaccess@0.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] gs6ag7k ^util-macros@1.19.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] yn2r3wf ^libxml2@2.9.10%gcc@7.5.0~python arch=linux-ubuntu18.04-x86_64
[+] jearpk4 ^libiconv@1.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] komekkm ^xz@5.2.5%gcc@7.5.0~pic arch=linux-ubuntu18.04-x86_64
[+] wbqbc5v ^numactl@2.0.14%gcc@7.5.0 patches=4e1d78cbbb85de625bad28705e748856033eaafab92a66dffd383a3d7e00cc94 arch=linux-ubuntu18.04-x86_64
- jlvvs27 ^scr@2.0.0%gcc@7.5.0+dtcmp~fortran~ipo+libyogrt async_api=NONE build_type=RelWithDebInfo cache_base=/tmp cntl_base=/tmp copy_config=none dev_path=/home/spack/devel-env/scr file_lock=FLOCK resource_manager=SLURM scr_config=scr.conf arch=linux-ubuntu18.04-x86_64
[+] fxiami4 ^dtcmp@1.1.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] tzf27nc ^lwgrp@1.0.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] ld352tm ^libyogrt@1.24%gcc@7.5.0~static scheduler=system arch=linux-ubuntu18.04-x86_64
[+] pv3zp64 ^pdsh@2.31%gcc@7.5.0+ssh+static_modules arch=linux-ubuntu18.04-x86_64
[+] vfrf7as ^silo@4.10.2%gcc@7.5.0~fortran+mpi+pic+shared~silex patches=7b5a1dc2a0e358e667088d77e7caa780967fa8ea60be89c44986605df9990abe arch=linux-ubuntu18.04-x86_64
[+] vedchc5 ^hdf5@1.10.7%gcc@7.5.0~cxx~debug~fortran~hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-ubuntu18.04-x86_64
==> Updating view at /home/spack/devel-env/.spack-env/view
Now that we have this done, we tell spack to rebuild both scr
and
macsio
by running spack install
.
$ spack install
==> Installing environment /home/spack/devel-env
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libyogrt-1.24-ld352tmlkqdjwucj2u5g4fktj2ab2xte
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pdsh-2.31-pv3zp64j5luhresoommun73mk5joqpb5
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openssl-1.1.1h-es377uqsqougfc67jyg7yfjyyuukin52
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/numactl-2.0.14-wbqbc5vw5sxzwhvu56p6x5nd5n4abrvh
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/json-cwx-0.12-7tkgwjvu2mi4ea2wsdetunq7g4k4r2nh
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-1.11.11-zqwfzhw5k2ollygh6nrjpsi7u4d4g6lu
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-3.1.6-pmsyupw6w3gql4loaor25gfumlmvkl25
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/lwgrp-1.0.3-tzf27ncg7jccpnayixks4hlam3wpv4wy
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-vedchc5aoqyu3ydbp346qrbpe6kg46rq
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/dtcmp-1.1.1-fxiami4ydeszdv55txp4zfin3kzfvpc7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/silo-4.10.2-vfrf7asfclt7epufnoxibfqbkntbk5k3
==> Installing scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte
==> No binary for scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte found: installing from source
==> scr: Executing phase: 'cmake'
==> scr: Executing phase: 'build'
==> scr: Executing phase: 'install'
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte
==> Installing macsio-1.1-6x6pqmrjajd57kbzgtwgdz3rpozuwzex
==> No binary for macsio-1.1-6x6pqmrjajd57kbzgtwgdz3rpozuwzex found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/a8/a86249b0f10647c0b631773db69568388094605ec1a0af149d9e61e95e6961ec.tar.gz
################################################################################################ 100.0%
==> macsio: Executing phase: 'cmake'
==> macsio: Executing phase: 'build'
==> macsio: Executing phase: 'install'
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/macsio-1.1-6x6pqmrjajd57kbzgtwgdz3rpozuwzex
==> Updating view at /home/spack/devel-env/.spack-env/view
==> Updating view at /home/spack/devel-env/.spack-env/view
This rebuilds scr
from the subdirectory we specified. If your
package uses cmake, spack will build the package in a build directory
that matches the hash for your package. From here you can change into
the appropriate directory and perform your own build/test cycles.
Now, we can develop our code. For the sake of this demo, we’re just going to intentionally introduce an error. Let’s edit a file and remove the first semi-colon we find.
$ $EDITOR scr/src/scr_copy.c
Once you have a development package, spack install
also works much
like “make”. Since spack knows the source code directory of the
package, it checks the filetimes on the source directory to see if
we’ve made recent changes. If the file times are newer, it will
rebuild scr
and any other package that depends on scr
.
$ spack install
==> Installing environment /home/spack/devel-env
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libyogrt-1.24-ld352tmlkqdjwucj2u5g4fktj2ab2xte
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pdsh-2.31-pv3zp64j5luhresoommun73mk5joqpb5
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openssl-1.1.1h-es377uqsqougfc67jyg7yfjyyuukin52
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/json-cwx-0.12-7tkgwjvu2mi4ea2wsdetunq7g4k4r2nh
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/numactl-2.0.14-wbqbc5vw5sxzwhvu56p6x5nd5n4abrvh
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-1.11.11-zqwfzhw5k2ollygh6nrjpsi7u4d4g6lu
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-3.1.6-pmsyupw6w3gql4loaor25gfumlmvkl25
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/lwgrp-1.0.3-tzf27ncg7jccpnayixks4hlam3wpv4wy
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-vedchc5aoqyu3ydbp346qrbpe6kg46rq
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/dtcmp-1.1.1-fxiami4ydeszdv55txp4zfin3kzfvpc7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/silo-4.10.2-vfrf7asfclt7epufnoxibfqbkntbk5k3
==> Installing scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte
==> No binary for scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte found: installing from source
==> scr: Executing phase: 'cmake'
==> scr: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j4'
4 errors found in build log:
178 make[2]: Entering directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
179 cd /home/spack/devel-env/scr/spack-build-jlvvs27 && /home/spack/spack/opt/spack/linux-ubunt
u18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j/bin/cmake -E cmake_de
pends "Unix Makefiles" /home/spack/devel-env/scr /home/spack/devel-env/scr/src /home/spack/
devel-env/scr/spack-build-jlvvs27 /home/spack/devel-env/scr/spack-build-jlvvs27/src /home/s
pack/devel-env/scr/spack-build-jlvvs27/src/CMakeFiles/scr_have_restart.dir/DependInfo.cmake
--color=
180 make[2]: Entering directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
181 cd /home/spack/devel-env/scr/spack-build-jlvvs27 && /home/spack/spack/opt/spack/linux-ubunt
u18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j/bin/cmake -E cmake_de
pends "Unix Makefiles" /home/spack/devel-env/scr /home/spack/devel-env/scr/examples /home/s
pack/devel-env/scr/spack-build-jlvvs27 /home/spack/devel-env/scr/spack-build-jlvvs27/exampl
es /home/spack/devel-env/scr/spack-build-jlvvs27/examples/CMakeFiles/test_api_multiple.dir/
DependInfo.cmake --color=
182 make[2]: Entering directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
183 cd /home/spack/devel-env/scr/spack-build-jlvvs27 && /home/spack/spack/opt/spack/linux-ubunt
u18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j/bin/cmake -E cmake_de
pends "Unix Makefiles" /home/spack/devel-env/scr /home/spack/devel-env/scr/examples /home/s
pack/devel-env/scr/spack-build-jlvvs27 /home/spack/devel-env/scr/spack-build-jlvvs27/exampl
es /home/spack/devel-env/scr/spack-build-jlvvs27/examples/CMakeFiles/test_api.dir/DependInf
o.cmake --color=
>> 184 /home/spack/devel-env/scr/src/scr_copy.c:44:1: error: expected ',' or ';' before 'int'
185 int print_usage()
186 ^~~
187 make[2]: Leaving directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
188 make -f src/CMakeFiles/scr_have_restart.dir/build.make src/CMakeFiles/scr_have_restart.dir
/build
189 make[2]: Leaving directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
190 make -f examples/CMakeFiles/test_api_multiple.dir/build.make examples/CMakeFiles/test_api_
multiple.dir/build
...
198 make[2]: Nothing to be done for 'src/CMakeFiles/scr_have_restart.dir/build'.
199 make[2]: Leaving directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
200 make[2]: Leaving directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
201 make[2]: Leaving directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
202 make -f examples/CMakeFiles/test_api.dir/build.make examples/CMakeFiles/test_api.dir/build
203 src/CMakeFiles/scr_copy.dir/build.make:84: recipe for target 'src/CMakeFiles/scr_copy.dir/s
cr_copy.c.o' failed
>> 204 make[2]: *** [src/CMakeFiles/scr_copy.dir/scr_copy.c.o] Error 1
205 make[2]: Leaving directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
206 CMakeFiles/Makefile2:1206: recipe for target 'src/CMakeFiles/scr_copy.dir/all' failed
>> 207 make[1]: *** [src/CMakeFiles/scr_copy.dir/all] Error 2
208 make[1]: *** Waiting for unfinished jobs....
209 [ 85%] Built target scr_have_restart
210 [ 88%] Built target test_api_multiple
211 make[2]: Entering directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
212 make[2]: Nothing to be done for 'examples/CMakeFiles/test_api.dir/build'.
213 make[2]: Leaving directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
214 [ 91%] Built target test_api
215 make[1]: Leaving directory '/home/spack/devel-env/scr/spack-build-jlvvs27'
216 Makefile:162: recipe for target 'all' failed
>> 217 make: *** [all] Error 2
See build log for details:
/home/spack/devel-env/scr/spack-build-out.txt
==> Warning: Skipping build of macsio-1.1-6x6pqmrjajd57kbzgtwgdz3rpozuwzex since scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte failed
==> Error: Failed to install scr due to RuntimeError: the transactional move of "/home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte" failed.
ProcessError: Command exited with status 2:
'make' '-j4'
==> Updating view at /home/spack/devel-env/.spack-env/view
==> Updating view at /home/spack/devel-env/.spack-env/view
Here, the build failed as expected. We can look at the output for the
build in scr/spack-build-out.txt
to find out why, or we can
launch a shell directly with the appropriate environment variables to
figure out what went wrong by using spack build-env scr@2.0 --
bash
. If that’s too much to remember, then sourcing
scr/spack-build-env.txt
will also set all the appropriate
environment variables so we can diagnose the build ourselves. Now
let’s fix it and rebuild directly.
$ $EDITOR scr/src/scr_copy.c
$ spack install
==> Installing environment /home/spack/devel-env
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libyogrt-1.24-ld352tmlkqdjwucj2u5g4fktj2ab2xte
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pdsh-2.31-pv3zp64j5luhresoommun73mk5joqpb5
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openssl-1.1.1h-es377uqsqougfc67jyg7yfjyyuukin52
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/json-cwx-0.12-7tkgwjvu2mi4ea2wsdetunq7g4k4r2nh
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/numactl-2.0.14-wbqbc5vw5sxzwhvu56p6x5nd5n4abrvh
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-1.11.11-zqwfzhw5k2ollygh6nrjpsi7u4d4g6lu
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-3.1.6-pmsyupw6w3gql4loaor25gfumlmvkl25
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/lwgrp-1.0.3-tzf27ncg7jccpnayixks4hlam3wpv4wy
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-vedchc5aoqyu3ydbp346qrbpe6kg46rq
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/dtcmp-1.1.1-fxiami4ydeszdv55txp4zfin3kzfvpc7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/silo-4.10.2-vfrf7asfclt7epufnoxibfqbkntbk5k3
==> Installing scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte
==> No binary for scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte found: installing from source
==> scr: Executing phase: 'cmake'
==> scr: Executing phase: 'build'
==> scr: Executing phase: 'install'
==> Warning: Module file already exists : skipping creation
file : /home/spack/spack/share/spack/modules/linux-ubuntu18.04-x86_64/scr-2.0.0-gcc-7.5.0-jlvvs27
spec : scr@2.0.0%gcc@7.5.0+dtcmp~fortran~ipo+libyogrt async_api=NONE build_type=RelWithDebInfo cache_base=/tmp cntl_base=/tmp copy_config=none dev_path=/home/spack/devel-env/scr file_lock=FLOCK resource_manager=SLURM scr_config=scr.conf arch=linux-ubuntu18.04-x86_64 ^autoconf@2.69%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^automake@1.16.2%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^berkeley-db@18.1.40%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^cmake@3.18.4%gcc@7.5.0~doc+ncurses+openssl+ownlibs~qt patches=bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-ubuntu18.04-x86_64 ^dtcmp@1.1.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^gdbm@1.18.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^hwloc@1.11.11%gcc@7.5.0~cairo~cuda~gl~libudev+libxml2~netloc~nvml+pci+shared arch=linux-ubuntu18.04-x86_64 ^libiconv@1.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^libpciaccess@0.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^libsigsegv@2.12%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^libtool@2.4.6%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^libxml2@2.9.10%gcc@7.5.0~python arch=linux-ubuntu18.04-x86_64 ^libyogrt@1.24%gcc@7.5.0~static scheduler=system arch=linux-ubuntu18.04-x86_64 ^lwgrp@1.0.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^m4@1.4.18%gcc@7.5.0+sigsegv patches=3877ab548f88597ab2327a2230ee048d2d07ace1062efe81fc92e91b7f39cd00,fc9b61654a3ba1a8d6cd78ce087e7c96366c290bc8d2c299f09828d793b853c8 arch=linux-ubuntu18.04-x86_64 ^ncurses@6.2%gcc@7.5.0~symlinks+termlib arch=linux-ubuntu18.04-x86_64 ^numactl@2.0.14%gcc@7.5.0 patches=4e1d78cbbb85de625bad28705e748856033eaafab92a66dffd383a3d7e00cc94 arch=linux-ubuntu18.04-x86_64 ^openmpi@3.1.6%gcc@7.5.0~atomics~cuda~cxx~cxx_exceptions+gpfs~java~legacylaunchers~lustre~memchecker~pmi~singularity~sqlite3+static~thread_multiple+vt+wrapper-rpath fabrics=none schedulers=none arch=linux-ubuntu18.04-x86_64 ^openssl@1.1.1h%gcc@7.5.0+systemcerts arch=linux-ubuntu18.04-x86_64 ^pdsh@2.31%gcc@7.5.0+ssh+static_modules arch=linux-ubuntu18.04-x86_64 ^perl@5.32.0%gcc@7.5.0+cpanm+shared+threads arch=linux-ubuntu18.04-x86_64 ^pkgconf@1.7.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^readline@8.0%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^util-macros@1.19.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^xz@5.2.5%gcc@7.5.0~pic arch=linux-ubuntu18.04-x86_64 ^zlib@1.2.11%gcc@7.5.0+optimize+pic+shared arch=linux-ubuntu18.04-x86_64
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/scr-2.0.0-jlvvs27eu2jsvzeobu22z6skocq3fmte
==> Installing macsio-1.1-6x6pqmrjajd57kbzgtwgdz3rpozuwzex
==> No binary for macsio-1.1-6x6pqmrjajd57kbzgtwgdz3rpozuwzex found: installing from source
==> Using cached archive: /home/spack/spack/var/spack/cache/_source-cache/archive/a8/a86249b0f10647c0b631773db69568388094605ec1a0af149d9e61e95e6961ec.tar.gz
==> macsio: Executing phase: 'cmake'
==> macsio: Executing phase: 'build'
==> macsio: Executing phase: 'install'
==> Warning: Module file already exists : skipping creation
file : /home/spack/spack/share/spack/modules/linux-ubuntu18.04-x86_64/macsio-1.1-gcc-7.5.0-6x6pqmr
spec : macsio@1.1%gcc@7.5.0~exodus~hdf5~ipo+mpi~pdb+scr+silo~szip~typhonio~zfp~zlib build_type=RelWithDebInfo patches=59479b946e5bbf677e814dc1cde12b38dd3b083fec8c543fc6d3abf9f73dbbfa arch=linux-ubuntu18.04-x86_64 ^autoconf@2.69%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^automake@1.16.2%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^berkeley-db@18.1.40%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^cmake@3.18.4%gcc@7.5.0~doc+ncurses+openssl+ownlibs~qt patches=bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-ubuntu18.04-x86_64 ^dtcmp@1.1.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^gdbm@1.18.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^hdf5@1.10.7%gcc@7.5.0~cxx~debug~fortran~hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-ubuntu18.04-x86_64 ^hwloc@1.11.11%gcc@7.5.0~cairo~cuda~gl~libudev+libxml2~netloc~nvml+pci+shared arch=linux-ubuntu18.04-x86_64 ^json-cwx@0.12%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^libiconv@1.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^libpciaccess@0.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^libsigsegv@2.12%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^libtool@2.4.6%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^libxml2@2.9.10%gcc@7.5.0~python arch=linux-ubuntu18.04-x86_64 ^libyogrt@1.24%gcc@7.5.0~static scheduler=system arch=linux-ubuntu18.04-x86_64 ^lwgrp@1.0.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^m4@1.4.18%gcc@7.5.0+sigsegv patches=3877ab548f88597ab2327a2230ee048d2d07ace1062efe81fc92e91b7f39cd00,fc9b61654a3ba1a8d6cd78ce087e7c96366c290bc8d2c299f09828d793b853c8 arch=linux-ubuntu18.04-x86_64 ^ncurses@6.2%gcc@7.5.0~symlinks+termlib arch=linux-ubuntu18.04-x86_64 ^numactl@2.0.14%gcc@7.5.0 patches=4e1d78cbbb85de625bad28705e748856033eaafab92a66dffd383a3d7e00cc94 arch=linux-ubuntu18.04-x86_64 ^openmpi@3.1.6%gcc@7.5.0~atomics~cuda~cxx~cxx_exceptions+gpfs~java~legacylaunchers~lustre~memchecker~pmi~singularity~sqlite3+static~thread_multiple+vt+wrapper-rpath fabrics=none schedulers=none arch=linux-ubuntu18.04-x86_64 ^openssl@1.1.1h%gcc@7.5.0+systemcerts arch=linux-ubuntu18.04-x86_64 ^pdsh@2.31%gcc@7.5.0+ssh+static_modules arch=linux-ubuntu18.04-x86_64 ^perl@5.32.0%gcc@7.5.0+cpanm+shared+threads arch=linux-ubuntu18.04-x86_64 ^pkgconf@1.7.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^readline@8.0%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^scr@2.0.0%gcc@7.5.0+dtcmp~fortran~ipo+libyogrt async_api=NONE build_type=RelWithDebInfo cache_base=/tmp cntl_base=/tmp copy_config=none dev_path=/home/spack/devel-env/scr file_lock=FLOCK resource_manager=SLURM scr_config=scr.conf arch=linux-ubuntu18.04-x86_64 ^silo@4.10.2%gcc@7.5.0~fortran+mpi+pic+shared~silex patches=7b5a1dc2a0e358e667088d77e7caa780967fa8ea60be89c44986605df9990abe arch=linux-ubuntu18.04-x86_64 ^util-macros@1.19.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64 ^xz@5.2.5%gcc@7.5.0~pic arch=linux-ubuntu18.04-x86_64 ^zlib@1.2.11%gcc@7.5.0+optimize+pic+shared arch=linux-ubuntu18.04-x86_64
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/macsio-1.1-6x6pqmrjajd57kbzgtwgdz3rpozuwzex
==> Updating view at /home/spack/devel-env/.spack-env/view
==> Updating view at /home/spack/devel-env/.spack-env/view
You’ll notice here that spack rebuilt both scr
and macsio
, as
expected.
Taking advantage of iterative builds with spack requires cooperation from your build system. When spack performs a rebuild on a development package, it reruns all the build stages for your package without cleaning the source and build directories to a pristine state. If your build system can take advantage of the previously compiled object files then you’ll end up with an iterative build.
If your package just uses make, you also should get iterative builds for free when running
spack develop
.If your package uses cmake with the typical
cmake
/build
/install
build stages, you’ll get iterative builds for free with spack because cmake doesn’t modify the filetime on theCMakeCache.txt
file if your cmake flags haven’t changed.If your package uses autoconf, then rerunning the typical
autoreconf
stage typically modifies the filetime ofconfig.h
, which can trigger a cascade of rebuilding.
Multiple packages can also be marked as develop. If we were
co-developing macsio
, we could run
$ spack develop macsio@1.1
==> Configuring spec macsio@1.1 for development at path macsio
==> Using cached archive: /home/spack/spack/var/spack/cache/_source-cache/archive/a8/a86249b0f10647c0b631773db69568388094605ec1a0af149d9e61e95e6961ec.tar.gz
==> Updating view at /home/spack/devel-env/.spack-env/view
$ spack concretize -f
==> Concretized macsio+scr
- i7om37w macsio@1.1%gcc@7.5.0~exodus~hdf5~ipo+mpi~pdb+scr+silo~szip~typhonio~zfp~zlib build_type=RelWithDebInfo dev_path=/home/spack/devel-env/macsio patches=59479b946e5bbf677e814dc1cde12b38dd3b083fec8c543fc6d3abf9f73dbbfa arch=linux-ubuntu18.04-x86_64
[+] bltycqw ^cmake@3.18.4%gcc@7.5.0~doc+ncurses+openssl+ownlibs~qt patches=bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-ubuntu18.04-x86_64
[+] crhlefo ^ncurses@6.2%gcc@7.5.0~symlinks+termlib arch=linux-ubuntu18.04-x86_64
[+] 4sh6pym ^pkgconf@1.7.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] es377uq ^openssl@1.1.1h%gcc@7.5.0+systemcerts arch=linux-ubuntu18.04-x86_64
[+] zfdvt2j ^perl@5.32.0%gcc@7.5.0+cpanm+shared+threads arch=linux-ubuntu18.04-x86_64
[+] 4ihuiaz ^berkeley-db@18.1.40%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] 4av4gyw ^gdbm@1.18.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] t54jzdy ^readline@8.0%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] smoyzzo ^zlib@1.2.11%gcc@7.5.0+optimize+pic+shared arch=linux-ubuntu18.04-x86_64
[+] 7tkgwjv ^json-cwx@0.12%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] mm33a3o ^autoconf@2.69%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] mkc3u4x ^m4@1.4.18%gcc@7.5.0+sigsegv patches=3877ab548f88597ab2327a2230ee048d2d07ace1062efe81fc92e91b7f39cd00,fc9b61654a3ba1a8d6cd78ce087e7c96366c290bc8d2c299f09828d793b853c8 arch=linux-ubuntu18.04-x86_64
[+] lbrx7ln ^libsigsegv@2.12%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] d2krmb5 ^automake@1.16.2%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] jdxbjft ^libtool@2.4.6%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] pmsyupw ^openmpi@3.1.6%gcc@7.5.0~atomics~cuda~cxx~cxx_exceptions+gpfs~java~legacylaunchers~lustre~memchecker~pmi~singularity~sqlite3+static~thread_multiple+vt+wrapper-rpath fabrics=none schedulers=none arch=linux-ubuntu18.04-x86_64
[+] zqwfzhw ^hwloc@1.11.11%gcc@7.5.0~cairo~cuda~gl~libudev+libxml2~netloc~nvml+pci+shared arch=linux-ubuntu18.04-x86_64
[+] bob4o5m ^libpciaccess@0.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] gs6ag7k ^util-macros@1.19.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] yn2r3wf ^libxml2@2.9.10%gcc@7.5.0~python arch=linux-ubuntu18.04-x86_64
[+] jearpk4 ^libiconv@1.16%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] komekkm ^xz@5.2.5%gcc@7.5.0~pic arch=linux-ubuntu18.04-x86_64
[+] wbqbc5v ^numactl@2.0.14%gcc@7.5.0 patches=4e1d78cbbb85de625bad28705e748856033eaafab92a66dffd383a3d7e00cc94 arch=linux-ubuntu18.04-x86_64
[+] jlvvs27 ^scr@2.0.0%gcc@7.5.0+dtcmp~fortran~ipo+libyogrt async_api=NONE build_type=RelWithDebInfo cache_base=/tmp cntl_base=/tmp copy_config=none dev_path=/home/spack/devel-env/scr file_lock=FLOCK resource_manager=SLURM scr_config=scr.conf arch=linux-ubuntu18.04-x86_64
[+] fxiami4 ^dtcmp@1.1.1%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] tzf27nc ^lwgrp@1.0.3%gcc@7.5.0 arch=linux-ubuntu18.04-x86_64
[+] ld352tm ^libyogrt@1.24%gcc@7.5.0~static scheduler=system arch=linux-ubuntu18.04-x86_64
[+] pv3zp64 ^pdsh@2.31%gcc@7.5.0+ssh+static_modules arch=linux-ubuntu18.04-x86_64
[+] vfrf7as ^silo@4.10.2%gcc@7.5.0~fortran+mpi+pic+shared~silex patches=7b5a1dc2a0e358e667088d77e7caa780967fa8ea60be89c44986605df9990abe arch=linux-ubuntu18.04-x86_64
[+] vedchc5 ^hdf5@1.10.7%gcc@7.5.0~cxx~debug~fortran~hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-ubuntu18.04-x86_64
==> Updating view at /home/spack/devel-env/.spack-env/view
Using development workflows also lets us ship our whole development process to another developer on the team. They can simply take our spack.yaml, create a new environment, and use this to replicate our build process. For example, we’ll make another development environment here.
$ cd ~
$ mkdir devel-other
$ cd devel-other
$ cp ../devel-env/spack.yaml .
$ spacktivate .
$ spack develop
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/47/471978ae0afb56a20847d3989b994fbd680d1dea21e77a5a46a964b6e3deed6b.tar.gz
################################################################################################ 100.0%
==> Using cached archive: /home/spack/spack/var/spack/cache/_source-cache/archive/a8/a86249b0f10647c0b631773db69568388094605ec1a0af149d9e61e95e6961ec.tar.gz
$ ls
macsio scr spack.yaml
Here, spack develop
with no arguments will check out or download
the source code and place it in the appropriate places.
When we’re done developing, we simply tell spack that it no longer needs to keep a development version of the package.
$ spack undevelop scr macsio
==> Removing scr from environment /home/spack/devel-other development specs
==> Removing macsio from environment /home/spack/devel-other development specs
==> Updating view at /home/spack/devel-other/.spack-env/view
Workflow Summary¶
Use the spack develop
command with an environment to make a
reproducible build environment for your development workflow. Spack
will set up all the dependencies for you and link all your packages
together. Within a development environment, spack install
works
similar to make
in that it will check file times to rebuild the
minimum number of spack packages necessary to reflect the changes to
your build.