Basic Installation Tutorial¶
This tutorial will guide you through the process of installing software using Spack. We will first cover the spack install command, focusing on the power of the spec syntax and the flexibility it gives to users. We will also cover the spack find command for viewing installed packages and the spack uninstall command. Finally, we will touch on how Spack manages compilers, especially as it relates to using Spack-built compilers within Spack. We will include full output from all of the commands demonstrated, although we will frequently call attention to only small portions of that output (or merely to the fact that it succeeded). The provided output is all from an AWS instance running Ubuntu 18.04
Installing Spack¶
Spack works out of the box. Simply clone spack and get going. We will clone Spack and immediately checkout the most recent release, v0.16.
$ git clone https://github.com/spack/spack ~/spack
Cloning into '/home/spack/spack'...
remote: Enumerating objects: 275937, done.K
remote: Counting objects: 100% (923/923), done.K
remote: Compressing objects: 100% (570/570), done.K
remote:nTotale2759379(delta3309),7reused4738.(delta|205),2pack-reused 275014K
Receiving objects: 100% (275937/275937), 111.88 MiB | 2.29 MiB/s, done.
Resolving deltas: 100% (116670/116670), done.
$ cd ~/spack
$ git checkout releases/v0.16
Branch 'releases/v0.16' set up to track remote branch 'releases/v0.16' from 'origin'.
Switched to a new branch 'releases/v0.16'
Next add Spack to your path. Spack has some nice command line
integration tools, so instead of simply appending to your PATH
variable, source the spack setup script.
$ . share/spack/setup-env.sh
You’re good to go!
What is in Spack?¶
The spack list command shows available packages.
$ spack list
==> 5063 packages.
3proxy libisal py-cython r-geor
abduco libiscsi py-cyvcf2 r-geosphere
abi-compliance-checker libjpeg py-d2to1 r-getopt
abi-dumper libjpeg-turbo py-dask r-getoptlong
The spack list command can also take a query string. Spack
automatically adds wildcards to both ends of the string, or you
can add your own wildcards. For example, we can view all available
python packages.
$ spack list 'py-*'
==> 1246 packages.
py-3to2 py-cheroot py-hypothesis py-planar py-scp
py-4suite-xml py-cherrypy py-ics py-planet py-scs
py-abipy py-chronyk py-identify py-plotly py-seaborn
py-absl-py py-cinema-lib py-idna py-pluggy py-secretstorage
Installing Packages¶
Installing a package with Spack is very simple. To install a piece of
software, simply type spack install <package_name>.
$ spack install zlib
==> Installing zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
==> No binary for zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/c3/c3e5e9fdd5004dcb542feda5ee4f0ff0744628baf8ed2dd5d66f8ca1197cb1a1.tar.gz
###################################################################################################################################################################### 100.0%
==> zlib: Executing phase: 'install'
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
Spack can install software either from source or from a binary cache. Packages in the binary cache are signed with GPG for security. For the tutorial we have prepared a binary cache so you don’t have to wait on slow compilation from source. To be able to install from the binary cache, we will need to configure Spack with the location of the binary cache and trust the GPG key that the binary cache was signed with.
$ spack mirror add tutorial /mirror
$ spack buildcache keys --install --trust
==> Fetching file:///mirror/build_cache/_pgp/95C717877AC00FFDAA8FD6E99CFA4A453B7C69B2.pub
###################################################################################################################################################################### 100.0%
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
gpg: keybox '/home/spack/spack/opt/spack/gpg/pubring.kbx' created
gpg: /home/spack/spack/opt/spack/gpg/trustdb.gpg: trustdb created
gpg: key 9CFA4A453B7C69B2: public key "sc-tutorial (GPG created for Spack) <becker33@llnl.gov>" imported
gpg: Total number processed: 1
gpg: imported: 1
You’ll learn more about configuring Spack later in the tutorial, but
for now you will be able to install the rest of the packages in the
tutorial from a binary cache using the same spack install
command. By default this will install the binary cached version if it
exists and fall back on installing from source.
Spack’s spec syntax is the interface by which we can request specific
configurations of the package. The % sigil is used to specify
compilers.
$ spack install zlib %clang
==> Installing zlib-1.2.11-5qffmms6gwykcikh6aag4h3z4scrfdla
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/clang-6.0.0/zlib-1.2.11/linux-ubuntu18.04-x86_64-clang-6.0.0-zlib-1.2.11-5qffmms6gwykcikh6aag4h3z4scrfdla.spack
###################################################################################################################################################################### 100.0%
==> Extracting zlib-1.2.11-5qffmms6gwykcikh6aag4h3z4scrfdla from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
==> Installing patchelf-0.10-2nj3vxxz5lwexpp5srseegxt7v6n4whp
==> No binary for patchelf-0.10-2nj3vxxz5lwexpp5srseegxt7v6n4whp found: installing from source
==> Fetching https://spack-llnl-mirror.s3-us-west-2.amazonaws.com/_source-cache/archive/b2/b2deabce05c34ce98558c0efb965f209de592197b2c88e930298d740ead09019.tar.gz
###################################################################################################################################################################### 100.0%
==> patchelf: Executing phase: 'autoreconf'
==> patchelf: Executing phase: 'configure'
==> patchelf: Executing phase: 'build'
==> patchelf: Executing phase: 'install'
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/patchelf-0.10-2nj3vxxz5lwexpp5srseegxt7v6n4whp
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/clang-6.0.0/zlib-1.2.11-5qffmms6gwykcikh6aag4h3z4scrfdla
Note that this installation is located separately from the previous one. We will discuss this in more detail later, but this is part of what allows Spack to support arbitrarily versioned software.
You can check for particular versions before requesting them. We will
use the spack versions command to see the available versions, and then
install a different version of zlib.
$ spack versions zlib
==> Safe versions (already checksummed):
1.2.11 1.2.8 1.2.3
==> Remote versions (not yet checksummed):
1.2.10 1.2.7.1 1.2.5.3 1.2.4.5 1.2.4.1 1.2.3.7 1.2.3.3 1.2.2.3 1.2.1.2 1.2.0.7 1.2.0.3 1.1.4 1.1.0 1.0.6 1.0.1 0.94 0.79
1.2.9 1.2.7 1.2.5.2 1.2.4.4 1.2.4 1.2.3.6 1.2.3.2 1.2.2.2 1.2.1.1 1.2.0.6 1.2.0.2 1.1.3 1.0.9 1.0.5 1.0-pre 0.93 0.71
1.2.7.3 1.2.6.1 1.2.5.1 1.2.4.3 1.2.3.9 1.2.3.5 1.2.3.1 1.2.2.1 1.2.1 1.2.0.5 1.2.0.1 1.1.2 1.0.8 1.0.4 0.99 0.92 0.9
1.2.7.2 1.2.6 1.2.5 1.2.4.2 1.2.3.8 1.2.3.4 1.2.2.4 1.2.2 1.2.0.8 1.2.0.4 1.2.0 1.1.1 1.0.7 1.0.2 0.95 0.91 0.8
The @ sigil is used to specify versions, both of packages and of
compilers.
$ spack install zlib@1.2.8
==> Installing zlib-1.2.8-t4p5jnme6csjrx4vbnla5za7ghcctg76
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.8/linux-ubuntu18.04-x86_64-gcc-7.5.0-zlib-1.2.8-t4p5jnme6csjrx4vbnla5za7ghcctg76.spack
###################################################################################################################################################################### 100.0%
==> Extracting zlib-1.2.8-t4p5jnme6csjrx4vbnla5za7ghcctg76 from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.8-t4p5jnme6csjrx4vbnla5za7ghcctg76
$ spack install zlib %gcc@6.5.0
==> Installing zlib-1.2.11-qtrzwovqizyaw2clz5rkhoxr3j5mbrxy
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-6.5.0/zlib-1.2.11/linux-ubuntu18.04-x86_64-gcc-6.5.0-zlib-1.2.11-qtrzwovqizyaw2clz5rkhoxr3j5mbrxy.spack
###################################################################################################################################################################### 100.0%
==> Extracting zlib-1.2.11-qtrzwovqizyaw2clz5rkhoxr3j5mbrxy from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-6.5.0/zlib-1.2.11-qtrzwovqizyaw2clz5rkhoxr3j5mbrxy
The spec syntax also includes compiler flags. Spack accepts
cppflags, cflags, cxxflags, fflags, ldflags, and
ldlibs parameters. The values of these fields must be quoted on
the command line if they include spaces. These values are injected
into the compile line automatically by the Spack compiler wrappers.
$ spack install zlib @1.2.8 cppflags=-O3
==> Installing zlib-1.2.8-h6i53ifim7gcwnzo4s6thvcbe7nxybps
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.8/linux-ubuntu18.04-x86_64-gcc-7.5.0-zlib-1.2.8-h6i53ifim7gcwnzo4s6thvcbe7nxybps.spack
###################################################################################################################################################################### 100.0%
==> Extracting zlib-1.2.8-h6i53ifim7gcwnzo4s6thvcbe7nxybps from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.8-h6i53ifim7gcwnzo4s6thvcbe7nxybps
The spack find command is used to query installed packages. Note that
some packages appear identical with the default output. The -l flag
shows the hash of each package, and the -f flag shows any non-empty
compiler flags of those packages.
$ spack find
==> 6 installed packages
-- linux-ubuntu18.04-x86_64 / clang@6.0.0 -----------------------
zlib@1.2.11
-- linux-ubuntu18.04-x86_64 / gcc@6.5.0 -------------------------
zlib@1.2.11
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
patchelf@0.10 zlib@1.2.8 zlib@1.2.8 zlib@1.2.11
Spack generates a hash for each spec. This hash is a function of the full provenance of the package, so any change to the spec affects the hash. Spack uses this value to compare specs and to generate unique installation directories for every combinatorial version. As we move into more complicated packages with software dependencies, we can see that Spack reuses existing packages to satisfy a dependency only when the existing package’s hash matches the desired spec.
$ spack install tcl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
==> Installing tcl-8.6.10-rtz76647rejri5fkpdmnthttncv2vgkx
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/tcl-8.6.10/linux-ubuntu18.04-x86_64-gcc-7.5.0-tcl-8.6.10-rtz76647rejri5fkpdmnthttncv2vgkx.spack
###################################################################################################################################################################### 100.0%
==> Extracting tcl-8.6.10-rtz76647rejri5fkpdmnthttncv2vgkx from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/tcl-8.6.10-rtz76647rejri5fkpdmnthttncv2vgkx
Dependencies can be explicitly requested using the ^ sigil. Note that
the spec syntax is recursive. Anything we could specify about the
top-level package, we can also specify about a dependency using ^.
$ spack install tcl ^zlib @1.2.8 %clang
==> Installing zlib-1.2.8-pdfmc5xxsopitln5y7wcirbmfz47o5tp
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/clang-6.0.0/zlib-1.2.8/linux-ubuntu18.04-x86_64-clang-6.0.0-zlib-1.2.8-pdfmc5xxsopitln5y7wcirbmfz47o5tp.spack
###################################################################################################################################################################### 100.0%
==> Extracting zlib-1.2.8-pdfmc5xxsopitln5y7wcirbmfz47o5tp from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/clang-6.0.0/zlib-1.2.8-pdfmc5xxsopitln5y7wcirbmfz47o5tp
==> Installing tcl-8.6.10-yqtoq2ezfg5v4xfhgdujilfxkcfjbjx7
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/clang-6.0.0/tcl-8.6.10/linux-ubuntu18.04-x86_64-clang-6.0.0-tcl-8.6.10-yqtoq2ezfg5v4xfhgdujilfxkcfjbjx7.spack
###################################################################################################################################################################### 100.0%
==> Extracting tcl-8.6.10-yqtoq2ezfg5v4xfhgdujilfxkcfjbjx7 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/clang-6.0.0/tcl-8.6.10-yqtoq2ezfg5v4xfhgdujilfxkcfjbjx7
Packages can also be referred to from the command line by their package
hash. Using the spack find -lf command earlier we saw that the hash
of our optimized installation of zlib (cppflags="-O3") began with
h6i53if. We can now explicitly build with that package without typing
the entire spec, by using the / sigil to refer to it by hash. As with
other tools like git, you do not need to specify an entire hash on the
command line. You can specify just enough digits to identify a hash
uniquely. If a hash prefix is ambiguous (i.e., two or more installed
packages share the prefix) then spack will report an error.
$ spack install tcl ^/h6i
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.8-h6i53ifim7gcwnzo4s6thvcbe7nxybps
==> Installing tcl-8.6.10-m2hc42k5bmqzqwudra5a3qx3fgyplnjr
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/tcl-8.6.10/linux-ubuntu18.04-x86_64-gcc-7.5.0-tcl-8.6.10-m2hc42k5bmqzqwudra5a3qx3fgyplnjr.spack
###################################################################################################################################################################### 100.0%
==> Extracting tcl-8.6.10-m2hc42k5bmqzqwudra5a3qx3fgyplnjr from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/tcl-8.6.10-m2hc42k5bmqzqwudra5a3qx3fgyplnjr
The spack find command can also take a -d flag, which can show
dependency information. Note that each package has a top-level entry,
even if it also appears as a dependency.
$ spack find -ldf
==> 10 installed packages
-- linux-ubuntu18.04-x86_64 / clang@6.0.0 -----------------------
yqtoq2e tcl@8.6.10%clang
pdfmc5x zlib@1.2.8%clang
pdfmc5x zlib@1.2.8%clang
5qffmms zlib@1.2.11%clang
-- linux-ubuntu18.04-x86_64 / gcc@6.5.0 -------------------------
qtrzwov zlib@1.2.11%gcc
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
2nj3vxx patchelf@0.10%gcc
m2hc42k tcl@8.6.10%gcc
h6i53if zlib@1.2.8%gcc cppflags="-O3"
rtz7664 tcl@8.6.10%gcc
smoyzzo zlib@1.2.11%gcc
t4p5jnm zlib@1.2.8%gcc
h6i53if zlib@1.2.8%gcc cppflags="-O3"
smoyzzo zlib@1.2.11%gcc
Let’s move on to slightly more complicated packages. HDF5 is a
good example of a more complicated package, with an MPI dependency. If
we install it “out of the box,” it will build with openmpi.
$ spack install hdf5
==> Installing libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12/linux-ubuntu18.04-x86_64-gcc-7.5.0-libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q.spack
###################################################################################################################################################################### 100.0%
==> Extracting libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
==> Installing pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3/linux-ubuntu18.04-x86_64-gcc-7.5.0-pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7.spack
###################################################################################################################################################################### 100.0%
==> Extracting pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
==> Installing util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/util-macros-1.19.1/linux-ubuntu18.04-x86_64-gcc-7.5.0-util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2.spack
###################################################################################################################################################################### 100.0%
==> Extracting util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2
==> Installing libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16/linux-ubuntu18.04-x86_64-gcc-7.5.0-libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl.spack
###################################################################################################################################################################### 100.0%
==> Extracting libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
==> Installing xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/xz-5.2.5/linux-ubuntu18.04-x86_64-gcc-7.5.0-xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v.spack
###################################################################################################################################################################### 100.0%
==> Extracting xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
==> Installing berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40/linux-ubuntu18.04-x86_64-gcc-7.5.0-berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn.spack
###################################################################################################################################################################### 100.0%
==> Extracting berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
==> Installing m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18/linux-ubuntu18.04-x86_64-gcc-7.5.0-m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps.spack
###################################################################################################################################################################### 100.0%
==> Extracting m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
==> Installing ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2/linux-ubuntu18.04-x86_64-gcc-7.5.0-ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm.spack
###################################################################################################################################################################### 100.0%
==> Extracting ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
==> Installing libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/libxml2-2.9.10/linux-ubuntu18.04-x86_64-gcc-7.5.0-libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d.spack
###################################################################################################################################################################### 100.0%
==> Extracting libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d
==> Installing libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6/linux-ubuntu18.04-x86_64-gcc-7.5.0-libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl.spack
###################################################################################################################################################################### 100.0%
==> Extracting libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
==> Installing readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v.spack
###################################################################################################################################################################### 100.0%
==> Extracting readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
==> Installing libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/libpciaccess-0.16/linux-ubuntu18.04-x86_64-gcc-7.5.0-libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7.spack
###################################################################################################################################################################### 100.0%
==> Extracting libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7
==> Installing gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1/linux-ubuntu18.04-x86_64-gcc-7.5.0-gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb.spack
###################################################################################################################################################################### 100.0%
==> Extracting gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
==> Installing perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t.spack
###################################################################################################################################################################### 100.0%
==> Extracting perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
==> Installing autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69/linux-ubuntu18.04-x86_64-gcc-7.5.0-autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd.spack
###################################################################################################################################################################### 100.0%
==> Extracting autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
==> Installing automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2/linux-ubuntu18.04-x86_64-gcc-7.5.0-automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6.spack
###################################################################################################################################################################### 100.0%
==> Extracting automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
==> Installing numactl-2.0.14-wbqbc5vw5sxzwhvu56p6x5nd5n4abrvh
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/numactl-2.0.14/linux-ubuntu18.04-x86_64-gcc-7.5.0-numactl-2.0.14-wbqbc5vw5sxzwhvu56p6x5nd5n4abrvh.spack
###################################################################################################################################################################### 100.0%
==> Extracting numactl-2.0.14-wbqbc5vw5sxzwhvu56p6x5nd5n4abrvh from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/numactl-2.0.14-wbqbc5vw5sxzwhvu56p6x5nd5n4abrvh
==> Installing hwloc-1.11.11-zqwfzhw5k2ollygh6nrjpsi7u4d4g6lu
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-1.11.11/linux-ubuntu18.04-x86_64-gcc-7.5.0-hwloc-1.11.11-zqwfzhw5k2ollygh6nrjpsi7u4d4g6lu.spack
###################################################################################################################################################################### 100.0%
==> Extracting hwloc-1.11.11-zqwfzhw5k2ollygh6nrjpsi7u4d4g6lu from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-1.11.11-zqwfzhw5k2ollygh6nrjpsi7u4d4g6lu
==> Installing openmpi-3.1.6-pmsyupw6w3gql4loaor25gfumlmvkl25
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-3.1.6/linux-ubuntu18.04-x86_64-gcc-7.5.0-openmpi-3.1.6-pmsyupw6w3gql4loaor25gfumlmvkl25.spack
###################################################################################################################################################################### 100.0%
==> Extracting openmpi-3.1.6-pmsyupw6w3gql4loaor25gfumlmvkl25 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-3.1.6-pmsyupw6w3gql4loaor25gfumlmvkl25
==> Installing hdf5-1.10.7-vedchc5aoqyu3ydbp346qrbpe6kg46rq
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7/linux-ubuntu18.04-x86_64-gcc-7.5.0-hdf5-1.10.7-vedchc5aoqyu3ydbp346qrbpe6kg46rq.spack
###################################################################################################################################################################### 100.0%
==> Extracting hdf5-1.10.7-vedchc5aoqyu3ydbp346qrbpe6kg46rq from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-vedchc5aoqyu3ydbp346qrbpe6kg46rq
Spack packages can also have build options, called variants. Boolean
variants can be specified using the + and ~ or -
sigils. There are two sigils for False to avoid conflicts with
shell parsing in different situations. Variants (boolean or otherwise)
can also be specified using the same syntax as compiler flags. Here
we can install HDF5 without MPI support.
$ spack install hdf5~mpi
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
==> Installing hdf5-1.10.7-sldl7zxtufal5qvh2zrggnxtrtava7a7
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7/linux-ubuntu18.04-x86_64-gcc-7.5.0-hdf5-1.10.7-sldl7zxtufal5qvh2zrggnxtrtava7a7.spack
###################################################################################################################################################################### 100.0%
==> Extracting hdf5-1.10.7-sldl7zxtufal5qvh2zrggnxtrtava7a7 from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-sldl7zxtufal5qvh2zrggnxtrtava7a7
We might also want to install HDF5 with a different MPI
implementation. While MPI is not a package itself, packages can depend on
abstract interfaces like MPI. Spack handles these through “virtual
dependencies.” A package, such as HDF5, can depend on the MPI
interface. Other packages (openmpi, mpich, mvapich, etc.)
provide the MPI interface. Any of these providers can be requested for
an MPI dependency. For example, we can build HDF5 with MPI support
provided by mpich by specifying a dependency on mpich. Spack also
supports versioning of virtual dependencies. A package can depend on the
MPI interface at version 3, and provider packages specify what version of
the interface they provide. The partial spec ^mpi@3 can be safisfied
by any of several providers.
$ spack install hdf5+hl+mpi ^mpich
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
==> Installing hwloc-2.2.0-a4cxlu767bxxceahypqpj2gjdt7hmhvm
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-2.2.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-hwloc-2.2.0-a4cxlu767bxxceahypqpj2gjdt7hmhvm.spack
###################################################################################################################################################################### 100.0%
==> Extracting hwloc-2.2.0-a4cxlu767bxxceahypqpj2gjdt7hmhvm from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-2.2.0-a4cxlu767bxxceahypqpj2gjdt7hmhvm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
==> Installing texinfo-6.5-p46ba5qb5wvx6a2bneh4vlurqusz35bj
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/texinfo-6.5/linux-ubuntu18.04-x86_64-gcc-7.5.0-texinfo-6.5-p46ba5qb5wvx6a2bneh4vlurqusz35bj.spack
###################################################################################################################################################################### 100.0%
==> Extracting texinfo-6.5-p46ba5qb5wvx6a2bneh4vlurqusz35bj from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/texinfo-6.5-p46ba5qb5wvx6a2bneh4vlurqusz35bj
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
==> Installing findutils-4.6.0-hrv4dx5txigi2la7siu3qsa7cervn7tv
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/findutils-4.6.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-findutils-4.6.0-hrv4dx5txigi2la7siu3qsa7cervn7tv.spack
###################################################################################################################################################################### 100.0%
==> Extracting findutils-4.6.0-hrv4dx5txigi2la7siu3qsa7cervn7tv from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/findutils-4.6.0-hrv4dx5txigi2la7siu3qsa7cervn7tv
==> Installing mpich-3.3.2-vbelg5sthuytvkxbrvue2alphviggiur
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpich-3.3.2/linux-ubuntu18.04-x86_64-gcc-7.5.0-mpich-3.3.2-vbelg5sthuytvkxbrvue2alphviggiur.spack
###################################################################################################################################################################### 100.0%
==> Extracting mpich-3.3.2-vbelg5sthuytvkxbrvue2alphviggiur from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpich-3.3.2-vbelg5sthuytvkxbrvue2alphviggiur
==> Installing hdf5-1.10.7-cq4k4cvkdbwzejti2f6za4morbud7ars
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7/linux-ubuntu18.04-x86_64-gcc-7.5.0-hdf5-1.10.7-cq4k4cvkdbwzejti2f6za4morbud7ars.spack
###################################################################################################################################################################### 100.0%
==> Extracting hdf5-1.10.7-cq4k4cvkdbwzejti2f6za4morbud7ars from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-cq4k4cvkdbwzejti2f6za4morbud7ars
We’ll do a quick check in on what we have installed so far.
$ spack find -ldf
==> 36 installed packages
-- linux-ubuntu18.04-x86_64 / clang@6.0.0 -----------------------
yqtoq2e tcl@8.6.10%clang
pdfmc5x zlib@1.2.8%clang
pdfmc5x zlib@1.2.8%clang
5qffmms zlib@1.2.11%clang
-- linux-ubuntu18.04-x86_64 / gcc@6.5.0 -------------------------
qtrzwov zlib@1.2.11%gcc
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
mm33a3o autoconf@2.69%gcc
mkc3u4x m4@1.4.18%gcc
lbrx7ln libsigsegv@2.12%gcc
zfdvt2j perl@5.32.0%gcc
4ihuiaz berkeley-db@18.1.40%gcc
4av4gyw gdbm@1.18.1%gcc
t54jzdy readline@8.0%gcc
crhlefo ncurses@6.2%gcc
d2krmb5 automake@1.16.2%gcc
zfdvt2j perl@5.32.0%gcc
4ihuiaz berkeley-db@18.1.40%gcc
4av4gyw gdbm@1.18.1%gcc
t54jzdy readline@8.0%gcc
crhlefo ncurses@6.2%gcc
4ihuiaz berkeley-db@18.1.40%gcc
hrv4dx5 findutils@4.6.0%gcc
4av4gyw gdbm@1.18.1%gcc
t54jzdy readline@8.0%gcc
crhlefo ncurses@6.2%gcc
sldl7zx hdf5@1.10.7%gcc
smoyzzo zlib@1.2.11%gcc
vedchc5 hdf5@1.10.7%gcc
pmsyupw openmpi@3.1.6%gcc
zqwfzhw hwloc@1.11.11%gcc
bob4o5m libpciaccess@0.16%gcc
yn2r3wf libxml2@2.9.10%gcc
jearpk4 libiconv@1.16%gcc
komekkm xz@5.2.5%gcc
smoyzzo zlib@1.2.11%gcc
wbqbc5v numactl@2.0.14%gcc
cq4k4cv hdf5@1.10.7%gcc
vbelg5s mpich@3.3.2%gcc
a4cxlu7 hwloc@2.2.0%gcc
bob4o5m libpciaccess@0.16%gcc
yn2r3wf libxml2@2.9.10%gcc
jearpk4 libiconv@1.16%gcc
komekkm xz@5.2.5%gcc
smoyzzo zlib@1.2.11%gcc
zqwfzhw hwloc@1.11.11%gcc
bob4o5m libpciaccess@0.16%gcc
yn2r3wf libxml2@2.9.10%gcc
jearpk4 libiconv@1.16%gcc
komekkm xz@5.2.5%gcc
smoyzzo zlib@1.2.11%gcc
wbqbc5v numactl@2.0.14%gcc
a4cxlu7 hwloc@2.2.0%gcc
bob4o5m libpciaccess@0.16%gcc
yn2r3wf libxml2@2.9.10%gcc
jearpk4 libiconv@1.16%gcc
komekkm xz@5.2.5%gcc
smoyzzo zlib@1.2.11%gcc
jearpk4 libiconv@1.16%gcc
bob4o5m libpciaccess@0.16%gcc
lbrx7ln libsigsegv@2.12%gcc
jdxbjft libtool@2.4.6%gcc
yn2r3wf libxml2@2.9.10%gcc
jearpk4 libiconv@1.16%gcc
komekkm xz@5.2.5%gcc
smoyzzo zlib@1.2.11%gcc
mkc3u4x m4@1.4.18%gcc
lbrx7ln libsigsegv@2.12%gcc
vbelg5s mpich@3.3.2%gcc
a4cxlu7 hwloc@2.2.0%gcc
bob4o5m libpciaccess@0.16%gcc
yn2r3wf libxml2@2.9.10%gcc
jearpk4 libiconv@1.16%gcc
komekkm xz@5.2.5%gcc
smoyzzo zlib@1.2.11%gcc
crhlefo ncurses@6.2%gcc
wbqbc5v numactl@2.0.14%gcc
pmsyupw openmpi@3.1.6%gcc
zqwfzhw hwloc@1.11.11%gcc
bob4o5m libpciaccess@0.16%gcc
yn2r3wf libxml2@2.9.10%gcc
jearpk4 libiconv@1.16%gcc
komekkm xz@5.2.5%gcc
smoyzzo zlib@1.2.11%gcc
wbqbc5v numactl@2.0.14%gcc
2nj3vxx patchelf@0.10%gcc
zfdvt2j perl@5.32.0%gcc
4ihuiaz berkeley-db@18.1.40%gcc
4av4gyw gdbm@1.18.1%gcc
t54jzdy readline@8.0%gcc
crhlefo ncurses@6.2%gcc
4sh6pym pkgconf@1.7.3%gcc
t54jzdy readline@8.0%gcc
crhlefo ncurses@6.2%gcc
rtz7664 tcl@8.6.10%gcc
smoyzzo zlib@1.2.11%gcc
m2hc42k tcl@8.6.10%gcc
h6i53if zlib@1.2.8%gcc cppflags="-O3"
p46ba5q texinfo@6.5%gcc
zfdvt2j perl@5.32.0%gcc
4ihuiaz berkeley-db@18.1.40%gcc
4av4gyw gdbm@1.18.1%gcc
t54jzdy readline@8.0%gcc
crhlefo ncurses@6.2%gcc
gs6ag7k util-macros@1.19.1%gcc
komekkm xz@5.2.5%gcc
t4p5jnm zlib@1.2.8%gcc
h6i53if zlib@1.2.8%gcc cppflags="-O3"
smoyzzo zlib@1.2.11%gcc
Spack models the dependencies of packages as a directed acyclic graph
(DAG). The spack find -d command shows the tree representation of
that graph. We can also use the spack graph command to view the entire
DAG as a graph.
$ spack graph hdf5+hl+mpi ^mpich
o hdf5
|\
| o mpich
| |\
| | |\
| | | |\
| | | | |\
| | | | | |\
| | | | | | |\
| | | | | | | |\
| | | | | | | | |\
| | | | | | o | | | hwloc
| | |_|_|_|/| | | |
| |/| | |_|/| | | |
| | | |/| |/ / / /
| | | o | | | | | libxml2
| |_|/| | | | | |
|/| |/| | | | | |
| |/| | | | | | |
| | | |\ \ \ \ \ \
o | | | | | | | | | zlib
/ / / / / / / / /
| | o | | | | | | xz
| | / / / / / /
| | | | o | | | libpciaccess
| |_|_|/| | | |
|/| | |/| | | |
| | | | o | | | util-macros
| | | | / / /
| | | | o | | findutils
| | |_|/| | |
| |/| |/| | |
| | | | |\| |
| | | | |\ \ \
| | | | | | |/
| | | | | |/|
| | | | o | | texinfo
| | | | | | o automake
| | | | | |/|
| | | | |/|/
| | | | | o autoconf
| | |_|_|/|
| |/| | |/
| | | | o perl
| | | | |\
| | | | o | gdbm
| | | | o | readline
| | | | o | ncurses
| |_|_|/ /
|/| | | |
o | | | | pkgconf
/ / / /
| | o | libtool
| |/ /
|/| |
o | | m4
o | | libsigsegv
/ /
o | libiconv
/
o berkeley-db
You may also have noticed that there are some packages shown in the
spack find -d output that we didn’t install explicitly. These are
dependencies that were installed implicitly. A few packages installed
implicitly are not shown as dependencies in the spack find -d
output. These are build dependencies. For example, libpciaccess is a
dependency of openmpi and requires m4 to build. Spack will build m4 as
part of the installation of openmpi, but it does not become a part of
the DAG because it is not linked in at run time. Spack handles build
dependencies differently because of their different (less strict)
consistency requirements. It is entirely possible to have two packages
using different versions of a dependency to build, which obviously cannot
be done with linked dependencies.
HDF5 is more complicated than our basic example of zlib and
tcl, but it’s still within the realm of software that an experienced
HPC user could reasonably expect to install given a bit of time. Now
let’s look at an even more complicated package.
$ spack install trilinos
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v
==> Installing openblas-0.3.12-te35tjxctgjpeeuk357xghoinvwf2k7u
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/openblas-0.3.12/linux-ubuntu18.04-x86_64-gcc-7.5.0-openblas-0.3.12-te35tjxctgjpeeuk357xghoinvwf2k7u.spack
###################################################################################################################################################################### 100.0%
==> Extracting openblas-0.3.12-te35tjxctgjpeeuk357xghoinvwf2k7u from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openblas-0.3.12-te35tjxctgjpeeuk357xghoinvwf2k7u
==> Installing autoconf-archive-2019.01.06-bdyarrkdgse5adcjr4kxqc4jns74k7yn
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-archive-2019.01.06/linux-ubuntu18.04-x86_64-gcc-7.5.0-autoconf-archive-2019.01.06-bdyarrkdgse5adcjr4kxqc4jns74k7yn.spack
###################################################################################################################################################################### 100.0%
==> Extracting autoconf-archive-2019.01.06-bdyarrkdgse5adcjr4kxqc4jns74k7yn from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-archive-2019.01.06-bdyarrkdgse5adcjr4kxqc4jns74k7yn
==> Installing diffutils-3.7-otkktenrrvcaf37a7zyeytmjuwsalvtr
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/diffutils-3.7/linux-ubuntu18.04-x86_64-gcc-7.5.0-diffutils-3.7-otkktenrrvcaf37a7zyeytmjuwsalvtr.spack
###################################################################################################################################################################### 100.0%
==> Extracting diffutils-3.7-otkktenrrvcaf37a7zyeytmjuwsalvtr from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/diffutils-3.7-otkktenrrvcaf37a7zyeytmjuwsalvtr
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d
==> Installing bzip2-1.0.8-fvfpt26p5divvq6344vojyn64enojlui
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/bzip2-1.0.8/linux-ubuntu18.04-x86_64-gcc-7.5.0-bzip2-1.0.8-fvfpt26p5divvq6344vojyn64enojlui.spack
###################################################################################################################################################################### 100.0%
==> Extracting bzip2-1.0.8-fvfpt26p5divvq6344vojyn64enojlui from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/bzip2-1.0.8-fvfpt26p5divvq6344vojyn64enojlui
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
==> Installing boost-1.74.0-hc5atqce4emwrrkxuyfayf5k43r5cst2
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/boost-1.74.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-boost-1.74.0-hc5atqce4emwrrkxuyfayf5k43r5cst2.spack
###################################################################################################################################################################### 100.0%
==> Extracting boost-1.74.0-hc5atqce4emwrrkxuyfayf5k43r5cst2 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/boost-1.74.0-hc5atqce4emwrrkxuyfayf5k43r5cst2
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
==> Installing openssl-1.1.1h-es377uqsqougfc67jyg7yfjyyuukin52
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/openssl-1.1.1h/linux-ubuntu18.04-x86_64-gcc-7.5.0-openssl-1.1.1h-es377uqsqougfc67jyg7yfjyyuukin52.spack
###################################################################################################################################################################### 100.0%
==> Extracting openssl-1.1.1h-es377uqsqougfc67jyg7yfjyyuukin52 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openssl-1.1.1h-es377uqsqougfc67jyg7yfjyyuukin52
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
==> Installing cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4/linux-ubuntu18.04-x86_64-gcc-7.5.0-cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j.spack
###################################################################################################################################################################### 100.0%
==> Extracting cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j from binary cache
==> Warning: patchelf --print-rpath /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j/share/cmake-3.18/Modules/Internal/CPack/CPack.OSXScriptLauncher.in produced an error [Command exited with status 1:
'/home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/patchelf-0.10-2nj3vxxz5lwexpp5srseegxt7v6n4whp/bin/patchelf' '--print-rpath' '/home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j/share/cmake-3.18/Modules/Internal/CPack/CPack.OSXScriptLauncher.in'
patchelf: not an ELF executable
]
==> Warning: patchelf --force-rpath --set-rpath /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j/share/cmake-3.18/Modules/Internal/CPack/CPack.OSXScriptLauncher.in failed with error Command exited with status 1:
'/home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/patchelf-0.10-2nj3vxxz5lwexpp5srseegxt7v6n4whp/bin/patchelf' '--force-rpath' '--set-rpath' '' '/home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j/share/cmake-3.18/Modules/Internal/CPack/CPack.OSXScriptLauncher.in'
patchelf: not an ELF executable
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
==> Installing metis-5.1.0-edcrft4l4szpqji2kowdkzq2ofueh3dr
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/metis-5.1.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-metis-5.1.0-edcrft4l4szpqji2kowdkzq2ofueh3dr.spack
###################################################################################################################################################################### 100.0%
==> Extracting metis-5.1.0-edcrft4l4szpqji2kowdkzq2ofueh3dr from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/metis-5.1.0-edcrft4l4szpqji2kowdkzq2ofueh3dr
==> Installing glm-0.9.7.1-n4xti2gmzctc2oskcjphmruidrna4vfg
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/glm-0.9.7.1/linux-ubuntu18.04-x86_64-gcc-7.5.0-glm-0.9.7.1-n4xti2gmzctc2oskcjphmruidrna4vfg.spack
###################################################################################################################################################################### 100.0%
==> Extracting glm-0.9.7.1-n4xti2gmzctc2oskcjphmruidrna4vfg from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/glm-0.9.7.1-n4xti2gmzctc2oskcjphmruidrna4vfg
==> Installing gmp-6.1.2-3ol3tldmm3oqflzrqonh6p2jmhgwsr4t
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/gmp-6.1.2/linux-ubuntu18.04-x86_64-gcc-7.5.0-gmp-6.1.2-3ol3tldmm3oqflzrqonh6p2jmhgwsr4t.spack
###################################################################################################################################################################### 100.0%
==> Extracting gmp-6.1.2-3ol3tldmm3oqflzrqonh6p2jmhgwsr4t from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gmp-6.1.2-3ol3tldmm3oqflzrqonh6p2jmhgwsr4t
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/numactl-2.0.14-wbqbc5vw5sxzwhvu56p6x5nd5n4abrvh
==> Installing mpfr-4.0.2-mpv2v7v7dasis5nbrrnmci5tc2rrca2y
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpfr-4.0.2/linux-ubuntu18.04-x86_64-gcc-7.5.0-mpfr-4.0.2-mpv2v7v7dasis5nbrrnmci5tc2rrca2y.spack
###################################################################################################################################################################### 100.0%
==> Extracting mpfr-4.0.2-mpv2v7v7dasis5nbrrnmci5tc2rrca2y from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpfr-4.0.2-mpv2v7v7dasis5nbrrnmci5tc2rrca2y
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-1.11.11-zqwfzhw5k2ollygh6nrjpsi7u4d4g6lu
==> Installing suite-sparse-5.8.1-rdfmg5b5lobcgmho4yqzd7zq7wibbelk
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/suite-sparse-5.8.1/linux-ubuntu18.04-x86_64-gcc-7.5.0-suite-sparse-5.8.1-rdfmg5b5lobcgmho4yqzd7zq7wibbelk.spack
###################################################################################################################################################################### 100.0%
==> Extracting suite-sparse-5.8.1-rdfmg5b5lobcgmho4yqzd7zq7wibbelk from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/suite-sparse-5.8.1-rdfmg5b5lobcgmho4yqzd7zq7wibbelk
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openmpi-3.1.6-pmsyupw6w3gql4loaor25gfumlmvkl25
==> Installing hypre-2.20.0-nndket2abxbsbuoocew5m643e36waxj3
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/hypre-2.20.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-hypre-2.20.0-nndket2abxbsbuoocew5m643e36waxj3.spack
###################################################################################################################################################################### 100.0%
==> Extracting hypre-2.20.0-nndket2abxbsbuoocew5m643e36waxj3 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hypre-2.20.0-nndket2abxbsbuoocew5m643e36waxj3
==> Installing parmetis-4.0.3-htdsyvt5yp6vl3nxbxp3627gohe7ldup
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/parmetis-4.0.3/linux-ubuntu18.04-x86_64-gcc-7.5.0-parmetis-4.0.3-htdsyvt5yp6vl3nxbxp3627gohe7ldup.spack
###################################################################################################################################################################### 100.0%
==> Extracting parmetis-4.0.3-htdsyvt5yp6vl3nxbxp3627gohe7ldup from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/parmetis-4.0.3-htdsyvt5yp6vl3nxbxp3627gohe7ldup
==> Installing hdf5-1.10.7-ejanivxt2gsv2qd3so7fil7izp4m3bcd
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7/linux-ubuntu18.04-x86_64-gcc-7.5.0-hdf5-1.10.7-ejanivxt2gsv2qd3so7fil7izp4m3bcd.spack
###################################################################################################################################################################### 100.0%
==> Extracting hdf5-1.10.7-ejanivxt2gsv2qd3so7fil7izp4m3bcd from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-ejanivxt2gsv2qd3so7fil7izp4m3bcd
==> Installing netlib-scalapack-2.1.0-wsiydak4jm7sms57zcu4rmzmdmgxqb5j
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/netlib-scalapack-2.1.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-netlib-scalapack-2.1.0-wsiydak4jm7sms57zcu4rmzmdmgxqb5j.spack
###################################################################################################################################################################### 100.0%
==> Extracting netlib-scalapack-2.1.0-wsiydak4jm7sms57zcu4rmzmdmgxqb5j from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/netlib-scalapack-2.1.0-wsiydak4jm7sms57zcu4rmzmdmgxqb5j
==> Installing matio-1.5.17-zoqjxgkw7h3yoxbagripnd6muniihwno
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/matio-1.5.17/linux-ubuntu18.04-x86_64-gcc-7.5.0-matio-1.5.17-zoqjxgkw7h3yoxbagripnd6muniihwno.spack
###################################################################################################################################################################### 100.0%
==> Extracting matio-1.5.17-zoqjxgkw7h3yoxbagripnd6muniihwno from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/matio-1.5.17-zoqjxgkw7h3yoxbagripnd6muniihwno
==> Installing netcdf-c-4.7.4-yixejlymvzs5aduzazrbs37hugw7sl7g
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/netcdf-c-4.7.4/linux-ubuntu18.04-x86_64-gcc-7.5.0-netcdf-c-4.7.4-yixejlymvzs5aduzazrbs37hugw7sl7g.spack
###################################################################################################################################################################### 100.0%
==> Extracting netcdf-c-4.7.4-yixejlymvzs5aduzazrbs37hugw7sl7g from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/netcdf-c-4.7.4-yixejlymvzs5aduzazrbs37hugw7sl7g
==> Installing mumps-5.3.3-3jmjrzw7kx44fyoltswqx7uhu33zikhm
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/mumps-5.3.3/linux-ubuntu18.04-x86_64-gcc-7.5.0-mumps-5.3.3-3jmjrzw7kx44fyoltswqx7uhu33zikhm.spack
###################################################################################################################################################################### 100.0%
==> Extracting mumps-5.3.3-3jmjrzw7kx44fyoltswqx7uhu33zikhm from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/mumps-5.3.3-3jmjrzw7kx44fyoltswqx7uhu33zikhm
==> Installing trilinos-13.0.1-qmjbxf2kamskoplhqlejy3esksrquni2
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/trilinos-13.0.1/linux-ubuntu18.04-x86_64-gcc-7.5.0-trilinos-13.0.1-qmjbxf2kamskoplhqlejy3esksrquni2.spack
###################################################################################################################################################################### 100.0%
==> Extracting trilinos-13.0.1-qmjbxf2kamskoplhqlejy3esksrquni2 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/trilinos-13.0.1-qmjbxf2kamskoplhqlejy3esksrquni2
Now we’re starting to see the power of Spack. Trilinos in its default configuration has 23 top level dependencies, many of which have dependencies of their own. Installing more complex packages can take days or weeks even for an experienced user. Although we’ve done a binary installation for the tutorial, a source installation of trilinos using Spack takes about 3 hours (depending on the system), but only 20 seconds of programmer time.
Spack manages consistency of the entire DAG. Every MPI dependency will
be satisfied by the same configuration of MPI, etc. If we install
trilinos again specifying a dependency on our previous HDF5 built
with mpich:
$ spack install trilinos +hdf5 ^hdf5+hl+mpi ^mpich
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/util-macros-1.19.1-gs6ag7ktdoiirb62t7bcagjw62szrrg2
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/xz-5.2.5-komekkmyciga3kl24edjmredhj3uyt7v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openblas-0.3.12-te35tjxctgjpeeuk357xghoinvwf2k7u
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-archive-2019.01.06-bdyarrkdgse5adcjr4kxqc4jns74k7yn
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/diffutils-3.7-otkktenrrvcaf37a7zyeytmjuwsalvtr
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libxml2-2.9.10-yn2r3wfhiilelyulh5toteicdtxjhw7d
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/bzip2-1.0.8-fvfpt26p5divvq6344vojyn64enojlui
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/boost-1.74.0-hc5atqce4emwrrkxuyfayf5k43r5cst2
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libpciaccess-0.16-bob4o5m3uku6vtdil5imasprgy775zg7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hwloc-2.2.0-a4cxlu767bxxceahypqpj2gjdt7hmhvm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/openssl-1.1.1h-es377uqsqougfc67jyg7yfjyyuukin52
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/texinfo-6.5-p46ba5qb5wvx6a2bneh4vlurqusz35bj
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/cmake-3.18.4-bltycqwh5oofai4f6o42q4uuj4w5zb3j
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/glm-0.9.7.1-n4xti2gmzctc2oskcjphmruidrna4vfg
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/metis-5.1.0-edcrft4l4szpqji2kowdkzq2ofueh3dr
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gmp-6.1.2-3ol3tldmm3oqflzrqonh6p2jmhgwsr4t
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/findutils-4.6.0-hrv4dx5txigi2la7siu3qsa7cervn7tv
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpfr-4.0.2-mpv2v7v7dasis5nbrrnmci5tc2rrca2y
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpich-3.3.2-vbelg5sthuytvkxbrvue2alphviggiur
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/suite-sparse-5.8.1-rdfmg5b5lobcgmho4yqzd7zq7wibbelk
==> Installing parmetis-4.0.3-i7otoakvxjvvg4vy3pu6sckkx2sw5jys
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/parmetis-4.0.3/linux-ubuntu18.04-x86_64-gcc-7.5.0-parmetis-4.0.3-i7otoakvxjvvg4vy3pu6sckkx2sw5jys.spack
###################################################################################################################################################################### 100.0%
==> Extracting parmetis-4.0.3-i7otoakvxjvvg4vy3pu6sckkx2sw5jys from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/parmetis-4.0.3-i7otoakvxjvvg4vy3pu6sckkx2sw5jys
==> Installing netlib-scalapack-2.1.0-h7suxc3q3jvwpdka2e2zlmyqg2qn6nri
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/netlib-scalapack-2.1.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-netlib-scalapack-2.1.0-h7suxc3q3jvwpdka2e2zlmyqg2qn6nri.spack
###################################################################################################################################################################### 100.0%
==> Extracting netlib-scalapack-2.1.0-h7suxc3q3jvwpdka2e2zlmyqg2qn6nri from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/netlib-scalapack-2.1.0-h7suxc3q3jvwpdka2e2zlmyqg2qn6nri
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-cq4k4cvkdbwzejti2f6za4morbud7ars
==> Installing hypre-2.20.0-us6giiixlzh6algkngco2m3sp5qt42xb
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/hypre-2.20.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-hypre-2.20.0-us6giiixlzh6algkngco2m3sp5qt42xb.spack
###################################################################################################################################################################### 100.0%
==> Extracting hypre-2.20.0-us6giiixlzh6algkngco2m3sp5qt42xb from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hypre-2.20.0-us6giiixlzh6algkngco2m3sp5qt42xb
==> Installing mumps-5.3.3-rmlof2fllv34xs6slcd5aiqfxwwfhcx3
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/mumps-5.3.3/linux-ubuntu18.04-x86_64-gcc-7.5.0-mumps-5.3.3-rmlof2fllv34xs6slcd5aiqfxwwfhcx3.spack
###################################################################################################################################################################### 100.0%
==> Extracting mumps-5.3.3-rmlof2fllv34xs6slcd5aiqfxwwfhcx3 from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/mumps-5.3.3-rmlof2fllv34xs6slcd5aiqfxwwfhcx3
==> Installing matio-1.5.17-usmrkquiytrw7ckm6tvygexfcoc3emjq
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/matio-1.5.17/linux-ubuntu18.04-x86_64-gcc-7.5.0-matio-1.5.17-usmrkquiytrw7ckm6tvygexfcoc3emjq.spack
###################################################################################################################################################################### 100.0%
==> Extracting matio-1.5.17-usmrkquiytrw7ckm6tvygexfcoc3emjq from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/matio-1.5.17-usmrkquiytrw7ckm6tvygexfcoc3emjq
==> Installing netcdf-c-4.7.4-spkgtxp7pq6beoz4uzrpmntvk3fmjnvo
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/netcdf-c-4.7.4/linux-ubuntu18.04-x86_64-gcc-7.5.0-netcdf-c-4.7.4-spkgtxp7pq6beoz4uzrpmntvk3fmjnvo.spack
###################################################################################################################################################################### 100.0%
==> Extracting netcdf-c-4.7.4-spkgtxp7pq6beoz4uzrpmntvk3fmjnvo from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/netcdf-c-4.7.4-spkgtxp7pq6beoz4uzrpmntvk3fmjnvo
==> Installing trilinos-13.0.1-xvzpvxdt7x66bifz4kg3t7jvsqewjytw
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/trilinos-13.0.1/linux-ubuntu18.04-x86_64-gcc-7.5.0-trilinos-13.0.1-xvzpvxdt7x66bifz4kg3t7jvsqewjytw.spack
###################################################################################################################################################################### 100.0%
==> Extracting trilinos-13.0.1-xvzpvxdt7x66bifz4kg3t7jvsqewjytw from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/trilinos-13.0.1-xvzpvxdt7x66bifz4kg3t7jvsqewjytw
We see that every package in the trilinos DAG that depends on MPI now
uses mpich.
$ spack find -d trilinos
==> 2 installed packages
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
trilinos@13.0.1
boost@1.74.0
bzip2@1.0.8
zlib@1.2.11
glm@0.9.7.1
hdf5@1.10.7
mpich@3.3.2
hwloc@2.2.0
libpciaccess@0.16
libxml2@2.9.10
libiconv@1.16
xz@5.2.5
hypre@2.20.0
openblas@0.3.12
matio@1.5.17
metis@5.1.0
mumps@5.3.3
netlib-scalapack@2.1.0
netcdf-c@4.7.4
parmetis@4.0.3
suite-sparse@5.8.1
gmp@6.1.2
mpfr@4.0.2
trilinos@13.0.1
boost@1.74.0
bzip2@1.0.8
zlib@1.2.11
glm@0.9.7.1
hdf5@1.10.7
openmpi@3.1.6
hwloc@1.11.11
libpciaccess@0.16
libxml2@2.9.10
libiconv@1.16
xz@5.2.5
numactl@2.0.14
hypre@2.20.0
openblas@0.3.12
matio@1.5.17
metis@5.1.0
mumps@5.3.3
netlib-scalapack@2.1.0
netcdf-c@4.7.4
parmetis@4.0.3
suite-sparse@5.8.1
gmp@6.1.2
mpfr@4.0.2
As we discussed before, the spack find -d command shows the
dependency information as a tree. While that is often sufficient, many
complicated packages, including trilinos, have dependencies that
cannot be fully represented as a tree. Again, the spack graph
command shows the full DAG of the dependency information.
$ spack graph trilinos
o trilinos
|\
| |\
| | |\
| | | |\
| | | | |\
| | | | | |\
| | | | | | |\
| | | | | | | |\
| | | | | | | | |\
| | | | | | | | | |\
| | | | | | | | | | |\
| | | | | | | | | | | |\
| | | | | | | | | | | | |\
o | | | | | | | | | | | | | suite-sparse
|\ \ \ \ \ \ \ \ \ \ \ \ \ \
| |_|_|/ / / / / / / / / / /
|/| | | | | | | | | | | | |
| |\ \ \ \ \ \ \ \ \ \ \ \ \
| | |\ \ \ \ \ \ \ \ \ \ \ \ \
| | | |_|_|_|_|_|/ / / / / / /
| | |/| | | | | | | | | | | |
| | | |\ \ \ \ \ \ \ \ \ \ \ \
| | | | |\ \ \ \ \ \ \ \ \ \ \ \
| | | | | | |_|_|_|_|_|_|_|_|/ /
| | | | | |/| | | | | | | | | |
| | | | | | o | | | | | | | | | parmetis
| | | |_|_|/| | | | | | | | | |
| | |/| | |/| | | | | | | | | |
| | | | | | |/ / / / / / / / /
| | | | | | | | | o | | | | | mumps
| |_|_|_|_|_|_|_|/| | | | | |
|/| | | | | | |_|/| | | | | |
| | | | | | |/| |/ / / / / /
| | | | | | | |/| | | | | |
| | | | | | | o | | | | | | netlib-scalapack
| |_|_|_|_|_|/| | | | | | |
|/| | | | | |/| | | | | | |
| | | | | |/|/ / / / / / /
| | o | | | | | | | | | | metis
| | | |_|/ / / / / / / /
| | |/| | | | | | | | |
| | | | | | | | | | o | glm
| | | |_|_|_|_|_|_|/ /
| | |/| | | | | | | |
| | o | | | | | | | | cmake
| | |\ \ \ \ \ \ \ \ \
| | o | | | | | | | | | openssl
| | |\ \ \ \ \ \ \ \ \ \
| | | | | | | | o | | | | netcdf-c
| | | |_|_|_|_|/| | | | |
| | |/| | | |_|/| | | | |
| | | | | |/| |/| | | | |
| | | | | | | | | |_|/ /
| | | | | | | | |/| | |
| | | | | | | | | o | | matio
| | | |_|_|_|_|_|/| | |
| | |/| | | | | |/ / /
| | | | | | | | | o | hypre
| |_|_|_|_|_|_|_|/| |
|/| | | | | | | |/ /
| | | | | | | |/| |
| | | | | | | | o | hdf5
| | | |_|_|_|_|/| |
| | |/| | | | |/ /
| | | | | | | o | openmpi
| | | |_|_|_|/| |
| | |/| | | | | |
| | | | | | | |\ \
| | | | | | | | |\ \
| | | | | | | | | o | hwloc
| | | | | | | | |/| |
| | | | | | | |/|/| |
| | | | | | | | | |\ \
| | | | | | | | | o | | libxml2
| | | |_|_|_|_|_|/| | |
| | |/| | | | | |/| | |
| | | | | | | |/| | | |
| | | | | | | | | |\ \ \
| | | | | | | | | | | | o boost
| | | |_|_|_|_|_|_|_|_|/|
| | |/| | | | | | | | | |
| | o | | | | | | | | | | zlib
| | / / / / / / / / / /
| | | | | | | | o | | | xz
| | | | | | | | / / /
| | | | | | | | | o | libpciaccess
| | | | | | | |_|/| |
| | | | | | |/| | | |
| | | | | | | | | |\ \
| | | | | | | | | o | | util-macros
| | | | | | | | | / /
| | | | | | | o | | | numactl
| | | | | |_|/| | | |
| | | | |/| | | | | |
| | | | | | | |\ \ \ \
| | | | | | | | |_|/ /
| | | | | | | |/| | |
| | | | | | | | |\ \ \
| o | | | | | | | | | | mpfr
| |\ \ \ \ \ \ \ \ \ \ \
| | |_|_|/ / / / / / / /
| |/| | | | | | | | | |
| | |\ \ \ \ \ \ \ \ \ \
| | | |_|_|_|_|/ / / / /
| | |/| | | | | | | | |
| | | |\ \ \ \ \ \ \ \ \
| | | | |_|_|/ / / / / /
| | | |/| | | | | | | |
| | | | |\ \ \ \ \ \ \ \
| | | | | |_|_|_|/ / / /
| | | | |/| | | | | | |
| | | | | |\ \ \ \ \ \ \
| | | | | | | |_|_|/ / /
| | | | | | |/| | | | |
| | | o | | | | | | | | gmp
| | |/| | | | | | | | |
| |/|/| | | | | | | | |
| | | |\| | | | | | | |
| | | | |_|/ / / / / /
| | | |/| | | | | | |
| | | | o | | | | | | automake
| | | |/| | | | | | |
| | | | | |/ / / / /
| | | | |/| | | | |
| | | o | | | | | | autoconf
| | |/| | | | | | |
| |/| | | | | | | |
| | | |/ / / / / /
| | | o | | | | | perl
| | | |\ \ \ \ \ \
| | | o | | | | | | gdbm
| | | o | | | | | | readline
| | | | |_|/ / / /
| | | |/| | | | |
| | | o | | | | | ncurses
| | | | |_|/ / /
| | | |/| | | |
| | | o | | | | pkgconf
| | | / / / /
o | | | | | | openblas
/ / / / / /
| o | | | | libtool
|/ / / / /
o | | | | m4
o | | | | libsigsegv
/ / / /
| | | o bzip2
| | | o diffutils
| | |/
| | o libiconv
| |
o | berkeley-db
/
o autoconf-archive
You can control how the output is displayed with a number of options.
The ASCII output from spack graph can be difficult to parse for
complicated packages. The output can be changed to the graphviz
.dot format using the --dot flag.
$ spack graph --dot trilinos | dot -Tpdf > trilinos_graph.pdf
Uninstalling Packages¶
Earlier we installed many configurations each of zlib and tcl. Now we will go through and uninstall some of those packages that we didn’t really need.
$ spack find -d tcl
==> 3 installed packages
-- linux-ubuntu18.04-x86_64 / clang@6.0.0 -----------------------
tcl@8.6.10
zlib@1.2.8
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
tcl@8.6.10
zlib@1.2.8
tcl@8.6.10
zlib@1.2.11
$ spack find zlib
==> 6 installed packages
-- linux-ubuntu18.04-x86_64 / clang@6.0.0 -----------------------
zlib@1.2.8 zlib@1.2.11
-- linux-ubuntu18.04-x86_64 / gcc@6.5.0 -------------------------
zlib@1.2.11
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
zlib@1.2.8 zlib@1.2.8 zlib@1.2.11
We can uninstall packages by spec using the same syntax as install.
$ spack uninstall zlib %gcc@6.5.0
y
==> The following packages will be uninstalled:
-- linux-ubuntu18.04-x86_64 / gcc@6.5.0 -------------------------
qtrzwov zlib@1.2.11
==> Do you want to proceed? [y/N] ==> Successfully uninstalled zlib@1.2.11%gcc@6.5.0+optimize+pic+shared arch=linux-ubuntu18.04-x86_64/qtrzwov
$ spack find -lf zlib
==> 5 installed packages
-- linux-ubuntu18.04-x86_64 / clang@6.0.0 -----------------------
pdfmc5x zlib@1.2.8%clang 5qffmms zlib@1.2.11%clang
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
t4p5jnm zlib@1.2.8%gcc h6i53if zlib@1.2.8%gcc cppflags="-O3" smoyzzo zlib@1.2.11%gcc
We can also uninstall packages by referring only to their hash.
We can use either -f (force) or -R (remove dependents as well) to
remove packages that are required by another installed package.
$ spack uninstall zlib/pdf
==> Will not uninstall zlib@1.2.8%clang@6.0.0/pdfmc5x
The following packages depend on it:
-- linux-ubuntu18.04-x86_64 / clang@6.0.0 -----------------------
yqtoq2e tcl@8.6.10
==> Error: There are still dependents.
use `spack uninstall --dependents` to remove dependents too
$ spack uninstall -R zlib/pdf
y
==> The following packages will be uninstalled:
-- linux-ubuntu18.04-x86_64 / clang@6.0.0 -----------------------
yqtoq2e tcl@8.6.10
pdfmc5x zlib@1.2.8
==> Do you want to proceed? [y/N] ==> Successfully uninstalled tcl@8.6.10%clang@6.0.0 arch=linux-ubuntu18.04-x86_64/yqtoq2e
==> Successfully uninstalled zlib@1.2.8%clang@6.0.0+optimize+pic+shared arch=linux-ubuntu18.04-x86_64/pdfmc5x
Spack will not uninstall packages that are not sufficiently
specified. The -a (all) flag can be used to uninstall multiple
packages at once.
$ spack uninstall trilinos
==> Error: trilinos matches multiple packages:
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
qmjbxf2 trilinos@13.0.1 xvzpvxd trilinos@13.0.1
==> Error: You can either:
a) use a more specific spec, or
b) specify the spec by its hash (e.g. `spack uninstall /hash`), or
c) use `spack uninstall --all` to uninstall ALL matching specs.
$ spack uninstall /qmj
y
==> The following packages will be uninstalled:
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
qmjbxf2 trilinos@13.0.1
==> Do you want to proceed? [y/N] ==> Successfully uninstalled trilinos@13.0.1%gcc@7.5.0~adios2~alloptpkgs+amesos+amesos2+anasazi+aztec+belos+boost~cgns~chaco~complex~cuda~debug~dtk+epetra+epetraext+exodus+explicit_template_instantiation~float+fortran+glm+gtest+hdf5~hwloc+hypre+ifpack+ifpack2~intrepid~intrepid2~ipo~isorropia+kokkos+matio~mesquite+metis~minitensor+ml+mpi+muelu+mumps+netcdf~nox~openmp~phalanx~piro~pnetcdf~python~rol~rythmos+sacado~shards+shared~shylu~stk~stratimikos~strumpack+suite-sparse~superlu~superlu-dist~teko~tempus+teuchos+tpetra~wrapper~x11~xsdkflags~zlib+zoltan+zoltan2 build_type=RelWithDebInfo cuda_arch=none cxxstd=11 gotype=long arch=linux-ubuntu18.04-x86_64/qmjbxf2
Advanced spack find Usage¶
We will go over some additional uses for the spack find command not
already covered in the Installing Spack and
Uninstalling Packages sections.
The spack find command can accept what we call “anonymous specs.”
These are expressions in spec syntax that do not contain a package
name. For example, spack find ^mpich will return every installed
package that depends on mpich, and spack find cppflags="-O3" will
return every package which was built with cppflags="-O3".
$ spack find ^mpich
==> 8 installed packages
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
hdf5@1.10.7 hypre@2.20.0 matio@1.5.17 mumps@5.3.3 netcdf-c@4.7.4 netlib-scalapack@2.1.0 parmetis@4.0.3 trilinos@13.0.1
$ spack find cppflags=-O3
==> 1 installed package
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
zlib@1.2.8
The find command can also show which packages were installed
explicitly (rather than pulled in as a dependency) using the -x
flag. The -X flag shows implicit installs only. The find command can
also show the path to which a spack package was installed using the -p
command.
$ spack find -px
==> 11 installed packages
-- linux-ubuntu18.04-x86_64 / clang@6.0.0 -----------------------
zlib@1.2.11 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/clang-6.0.0/zlib-1.2.11-5qffmms6gwykcikh6aag4h3z4scrfdla
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
hdf5@1.10.7 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-sldl7zxtufal5qvh2zrggnxtrtava7a7
hdf5@1.10.7 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-vedchc5aoqyu3ydbp346qrbpe6kg46rq
hdf5@1.10.7 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/hdf5-1.10.7-cq4k4cvkdbwzejti2f6za4morbud7ars
patchelf@0.10 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/patchelf-0.10-2nj3vxxz5lwexpp5srseegxt7v6n4whp
tcl@8.6.10 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/tcl-8.6.10-m2hc42k5bmqzqwudra5a3qx3fgyplnjr
tcl@8.6.10 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/tcl-8.6.10-rtz76647rejri5fkpdmnthttncv2vgkx
trilinos@13.0.1 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/trilinos-13.0.1-xvzpvxdt7x66bifz4kg3t7jvsqewjytw
zlib@1.2.8 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.8-t4p5jnme6csjrx4vbnla5za7ghcctg76
zlib@1.2.8 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.8-h6i53ifim7gcwnzo4s6thvcbe7nxybps
zlib@1.2.11 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
Customizing Compilers¶
Spack manages a list of available compilers on the system, detected
automatically from from the user’s PATH variable. The spack
compilers command is an alias for the command spack compiler list.
$ spack compilers
==> Available compilers
-- clang ubuntu18.04-x86_64 -------------------------------------
clang@6.0.0
-- gcc ubuntu18.04-x86_64 ---------------------------------------
gcc@7.5.0 gcc@6.5.0
The compilers are maintained in a YAML file. Later in the tutorial you will learn how to configure compilers by hand for special cases. Spack also has tools to add compilers, and compilers built with Spack can be added to the configuration.
$ spack install gcc @8.3.0
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libiconv-1.16-jearpk4xci4zc7dkrza4fufaqfkq7rfl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libsigsegv-2.12-lbrx7lnfz46ukewxbhxnucmx76g23c6q
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/berkeley-db-18.1.40-4ihuiazsglf22f3pntq5hc4kyszqzexn
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/pkgconf-1.7.3-4sh6pymrm2ms4auu3ajbjjr6fiuhz5g7
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/zlib-1.2.11-smoyzzo2qhzpn6mg6rd3l2p7b23enshg
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/diffutils-3.7-otkktenrrvcaf37a7zyeytmjuwsalvtr
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/m4-1.4.18-mkc3u4x2p2wie6jfhuku7g5rkovcrxps
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/ncurses-6.2-crhlefo3dv7lmsv5pf4icsy4gepkdorm
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/libtool-2.4.6-jdxbjftheiotj6solpomva7dowrhlerl
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/readline-8.0-t54jzdy2jj4snltjazlm3br2urcilc6v
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gdbm-1.18.1-4av4gywgpaspkhy3dvbb62nulqogtzbb
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/perl-5.32.0-zfdvt2jjuaees43ffrrtphqs2ky3o22t
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/autoconf-2.69-mm33a3ocsv3jsh2tfxc4mlab4xsurtdd
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/automake-1.16.2-d2krmb5gweivlnztcymhklzsqbrpatt6
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gmp-6.1.2-3ol3tldmm3oqflzrqonh6p2jmhgwsr4t
==> Installing isl-0.18-4lkvfkviv45b2htxuyfxbivafx4wajud
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/isl-0.18/linux-ubuntu18.04-x86_64-gcc-7.5.0-isl-0.18-4lkvfkviv45b2htxuyfxbivafx4wajud.spack
###################################################################################################################################################################### 100.0%
==> Extracting isl-0.18-4lkvfkviv45b2htxuyfxbivafx4wajud from binary cache
gpgconf: socketdir is '/home/spack/.gnupg'
gpgconf: no /run/user dir
gpgconf: using homedir as fallback
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/isl-0.18-4lkvfkviv45b2htxuyfxbivafx4wajud
==> Installing mpfr-3.1.6-nwsubswuytvvsjtu3nuyuxquwyxyfebj
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpfr-3.1.6/linux-ubuntu18.04-x86_64-gcc-7.5.0-mpfr-3.1.6-nwsubswuytvvsjtu3nuyuxquwyxyfebj.spack
###################################################################################################################################################################### 100.0%
==> Extracting mpfr-3.1.6-nwsubswuytvvsjtu3nuyuxquwyxyfebj from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpfr-3.1.6-nwsubswuytvvsjtu3nuyuxquwyxyfebj
==> Installing mpc-1.1.0-uur2dd6aco22hxagwzxco23rvtyvqd7t
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpc-1.1.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-mpc-1.1.0-uur2dd6aco22hxagwzxco23rvtyvqd7t.spack
###################################################################################################################################################################### 100.0%
==> Extracting mpc-1.1.0-uur2dd6aco22hxagwzxco23rvtyvqd7t from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/mpc-1.1.0-uur2dd6aco22hxagwzxco23rvtyvqd7t
==> Installing gcc-8.3.0-7mh4po7nmny3ku6c3jv3ovcssb6wwqlw
==> Fetching file:///mirror/build_cache/linux-ubuntu18.04-x86_64/gcc-7.5.0/gcc-8.3.0/linux-ubuntu18.04-x86_64-gcc-7.5.0-gcc-8.3.0-7mh4po7nmny3ku6c3jv3ovcssb6wwqlw.spack
###################################################################################################################################################################### 100.0%
==> Extracting gcc-8.3.0-7mh4po7nmny3ku6c3jv3ovcssb6wwqlw from binary cache
[+] /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gcc-8.3.0-7mh4po7nmny3ku6c3jv3ovcssb6wwqlw
$ spack find -p gcc
==> 1 installed package
-- linux-ubuntu18.04-x86_64 / gcc@7.5.0 -------------------------
gcc@8.3.0 /home/spack/spack/opt/spack/linux-ubuntu18.04-x86_64/gcc-7.5.0/gcc-8.3.0-7mh4po7nmny3ku6c3jv3ovcssb6wwqlw
We can add gcc to Spack as an available compiler using the spack
compiler add command. This will allow future packages to build with
gcc@8.3.0.
$ spack compiler add $(spack location -i gcc@8.3.0)
==> Added 1 new compiler to /home/spack/.spack/linux/compilers.yaml
gcc@8.3.0
==> Compilers are defined in the following files:
/home/spack/.spack/linux/compilers.yaml
We can also remove compilers from our configuration using spack compiler remove <compiler_spec>
$ spack compiler remove gcc@8.3.0
==> Removed compiler gcc@8.3.0