Tutorial setup
If you have not done the prior sections, you’ll need to start the docker image:
docker run -it ghcr.io/spack/tutorial:hpcic24
and then set Spack up like this:
git clone --depth=100 --branch=releases/v0.22 https://github.com/spack/spack
. spack/share/spack/setup-env.sh
spack tutorial -y
spack bootstrap now
spack compiler find
See the Basic Installation Tutorial for full details on setup. For more
help, join us in the #tutorial channel on Slack – get an
invitation at slack.spack.io
Scripting with Spack
This tutorial introduces advanced Spack features related to scripting.
Specifically, we will show you how to write scripts using spack find
and spack python.
Earlier sections of the tutorial demonstrated using spack find to
list and search installed packages.
The spack python command gives you access to all of Spack’s internal
APIs, allowing
you to write more complex queries, for example.
Since Spack has an extensive API, we’ll only scratch the surface here. We’ll give you enough information to start writing your own scripts and to find what you need, with a little digging.
Setting up the tutorial
Before proceeding, let’s ensure the outputs for this segment are reasonable. Since you may have a lot of packages installed from earlier sections of the tutorial, we want to perform a little cleanup.
Let’s remove gcc@8.3.0 and re-install hdf5 and zlib@clang
using the following commands:
$ spack uninstall -ay
==> Successfully uninstalled gcc@12.3.0%gcc@11.4.0~binutils+bootstrap~graphite~nvptx~piclibs~profiled~strip build_system=autotools build_type=RelWithDebInfo languages=c,c++,fortran arch=linux-ubuntu22.04-x86_64_v3/chmemdi
==> Successfully uninstalled gawk@5.2.2%gcc@11.4.0~nls build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/t4xydm4
==> Successfully uninstalled mpc@1.3.1%gcc@11.4.0 build_system=autotools libs=shared,static arch=linux-ubuntu22.04-x86_64_v3/jueol5k
==> Successfully uninstalled mpfr@4.2.0%gcc@11.4.0 build_system=autotools libs=shared,static arch=linux-ubuntu22.04-x86_64_v3/qpadvjw
==> Successfully uninstalled texinfo@7.0.3%gcc@11.4.0 build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/km6pqxp
==> Successfully uninstalled gettext@0.22.3%gcc@11.4.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/y26lmlo
==> Successfully uninstalled tar@1.34%gcc@11.4.0 build_system=autotools zip=pigz arch=linux-ubuntu22.04-x86_64_v3/vdb3ozo
==> Successfully uninstalled zstd@1.5.5%gcc@11.4.0+programs build_system=makefile compression=none libs=shared,static arch=linux-ubuntu22.04-x86_64_v3/jkznmrm
==> Successfully uninstalled pigz@2.7%gcc@11.4.0 build_system=makefile arch=linux-ubuntu22.04-x86_64_v3/catlxmo
==> Successfully uninstalled libxml2@2.10.3%gcc@11.4.0+pic~python+shared build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/67qoxbv
==> Successfully uninstalled autoconf-archive@2023.02.20%gcc@11.4.0 build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/4wbogd6
==> Successfully uninstalled gmp@6.2.1%gcc@11.4.0+cxx build_system=autotools libs=shared,static patches=69ad2e2 arch=linux-ubuntu22.04-x86_64_v3/2fyiqrp
==> Successfully uninstalled libtool@2.4.7%gcc@11.4.0 build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/rgag55h
==> Successfully uninstalled automake@1.16.5%gcc@11.4.0 build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/d3cncgl
==> Successfully uninstalled autoconf@2.69%gcc@11.4.0 build_system=autotools patches=35c4492,7793209,a49dd5b arch=linux-ubuntu22.04-x86_64_v3/mnfnoa5
==> Successfully uninstalled perl@5.38.0%gcc@11.4.0+cpanm+opcode+open+shared+threads build_system=generic patches=714e4d1 arch=linux-ubuntu22.04-x86_64_v3/dg34i2a
==> Successfully uninstalled zlib-ng@2.1.4%gcc@11.4.0+compat+opt build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/5xcetrv
==> Successfully uninstalled gdbm@1.23%gcc@11.4.0 build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/m626hzw
==> Successfully uninstalled readline@8.2%gcc@11.4.0 build_system=autotools patches=bbf97f1 arch=linux-ubuntu22.04-x86_64_v3/xxgqlmj
==> Successfully uninstalled ncurses@6.4%gcc@11.4.0~symlinks+termlib abi=none build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/qqlh6as
==> Successfully uninstalled pkgconf@1.9.5%gcc@11.4.0 build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/zjgtpdo
==> Successfully uninstalled bzip2@1.0.8%gcc@11.4.0~debug~pic+shared build_system=generic arch=linux-ubuntu22.04-x86_64_v3/4oz3kpf
==> Successfully uninstalled berkeley-db@18.1.40%gcc@11.4.0+cxx~docs+stl build_system=autotools patches=26090f4,b231fcc arch=linux-ubuntu22.04-x86_64_v3/ku7makq
==> Successfully uninstalled m4@1.4.19%gcc@11.4.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-ubuntu22.04-x86_64_v3/jnv5nut
==> Successfully uninstalled libsigsegv@2.14%gcc@11.4.0 build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/zuopqri
==> Successfully uninstalled diffutils@3.9%gcc@11.4.0 build_system=autotools arch=linux-ubuntu22.04-x86_64_v3/ueheij3
==> Successfully uninstalled libiconv@1.17%gcc@11.4.0 build_system=autotools libs=shared,static arch=linux-ubuntu22.04-x86_64_v3/ivn4eq4
==> Successfully uninstalled xz@5.4.1%gcc@11.4.0~pic build_system=autotools libs=shared,static arch=linux-ubuntu22.04-x86_64_v3/axxqoeq
==> Successfully uninstalled gmake@4.4.1%gcc@11.4.0~guile build_system=generic arch=linux-ubuntu22.04-x86_64_v3/znvoani
$ spack compiler rm gcc@12
==> gcc@12.3.0 has been removed
$ spack install hdf5
==> Installing gmake-4.4.1-znvoaniggvauzxv4yobchqt4g7tyjuc7 [1/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-gmake-4.4.1-znvoaniggvauzxv4yobchqt4g7tyjuc7.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/gmake-4.4.1/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-gmake-4.4.1-znvoaniggvauzxv4yobchqt4g7tyjuc7.spack
==> Extracting gmake-4.4.1-znvoaniggvauzxv4yobchqt4g7tyjuc7 from binary cache
==> gmake: Successfully installed gmake-4.4.1-znvoaniggvauzxv4yobchqt4g7tyjuc7
Search: 0.00s. Fetch: 0.10s. Install: 0.05s. Extract: 0.04s. Relocate: 0.01s. Total: 0.15s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/gmake-4.4.1-znvoaniggvauzxv4yobchqt4g7tyjuc7
==> Installing ca-certificates-mozilla-2023-05-30-ct4al4udowha5xuopzhn3elwj2tsjomj [2/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-ca-certificates-mozilla-2023-05-30-ct4al4udowha5xuopzhn3elwj2tsjomj.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/ca-certificates-mozilla-2023-05-30/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-ca-certificates-mozilla-2023-05-30-ct4al4udowha5xuopzhn3elwj2tsjomj.spack
==> Extracting ca-certificates-mozilla-2023-05-30-ct4al4udowha5xuopzhn3elwj2tsjomj from binary cache
==> ca-certificates-mozilla: Successfully installed ca-certificates-mozilla-2023-05-30-ct4al4udowha5xuopzhn3elwj2tsjomj
Search: 0.00s. Fetch: 0.01s. Install: 0.02s. Extract: 0.01s. Relocate: 0.01s. Total: 0.03s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/ca-certificates-mozilla-2023-05-30-ct4al4udowha5xuopzhn3elwj2tsjomj
==> Installing findutils-4.9.0-cws3eftnvff7shmr3acylis3utohkxfn [3/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-findutils-4.9.0-cws3eftnvff7shmr3acylis3utohkxfn.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/findutils-4.9.0/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-findutils-4.9.0-cws3eftnvff7shmr3acylis3utohkxfn.spack
==> Extracting findutils-4.9.0-cws3eftnvff7shmr3acylis3utohkxfn from binary cache
==> findutils: Successfully installed findutils-4.9.0-cws3eftnvff7shmr3acylis3utohkxfn
Search: 0.00s. Fetch: 0.01s. Install: 0.07s. Extract: 0.05s. Relocate: 0.01s. Total: 0.07s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/findutils-4.9.0-cws3eftnvff7shmr3acylis3utohkxfn
==> Installing zstd-1.5.5-jkznmrmqdgtpzvs42qxljrjs6m6f6aho [4/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-zstd-1.5.5-jkznmrmqdgtpzvs42qxljrjs6m6f6aho.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/zstd-1.5.5/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-zstd-1.5.5-jkznmrmqdgtpzvs42qxljrjs6m6f6aho.spack
==> Extracting zstd-1.5.5-jkznmrmqdgtpzvs42qxljrjs6m6f6aho from binary cache
==> zstd: Successfully installed zstd-1.5.5-jkznmrmqdgtpzvs42qxljrjs6m6f6aho
Search: 0.00s. Fetch: 0.01s. Install: 0.05s. Extract: 0.04s. Relocate: 0.01s. Total: 0.06s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/zstd-1.5.5-jkznmrmqdgtpzvs42qxljrjs6m6f6aho
==> Installing berkeley-db-18.1.40-ku7makqmto7yrue2y3duu2phqtnvqd26 [5/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-berkeley-db-18.1.40-ku7makqmto7yrue2y3duu2phqtnvqd26.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/berkeley-db-18.1.40/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-berkeley-db-18.1.40-ku7makqmto7yrue2y3duu2phqtnvqd26.spack
==> Extracting berkeley-db-18.1.40-ku7makqmto7yrue2y3duu2phqtnvqd26 from binary cache
==> berkeley-db: Successfully installed berkeley-db-18.1.40-ku7makqmto7yrue2y3duu2phqtnvqd26
Search: 0.00s. Fetch: 0.01s. Install: 0.11s. Extract: 0.09s. Relocate: 0.02s. Total: 0.12s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/berkeley-db-18.1.40-ku7makqmto7yrue2y3duu2phqtnvqd26
==> Installing zlib-ng-2.1.4-5xcetrvs3fzd7k27dw5duyxitnsy4uvh [6/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-zlib-ng-2.1.4-5xcetrvs3fzd7k27dw5duyxitnsy4uvh.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/zlib-ng-2.1.4/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-zlib-ng-2.1.4-5xcetrvs3fzd7k27dw5duyxitnsy4uvh.spack
==> Extracting zlib-ng-2.1.4-5xcetrvs3fzd7k27dw5duyxitnsy4uvh from binary cache
==> zlib-ng: Successfully installed zlib-ng-2.1.4-5xcetrvs3fzd7k27dw5duyxitnsy4uvh
Search: 0.00s. Fetch: 0.01s. Install: 0.03s. Extract: 0.02s. Relocate: 0.01s. Total: 0.04s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/zlib-ng-2.1.4-5xcetrvs3fzd7k27dw5duyxitnsy4uvh
==> Installing libsigsegv-2.14-zuopqrik4y7vhqq2isjnr6mbixyks4uk [7/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libsigsegv-2.14-zuopqrik4y7vhqq2isjnr6mbixyks4uk.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libsigsegv-2.14/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libsigsegv-2.14-zuopqrik4y7vhqq2isjnr6mbixyks4uk.spack
==> Extracting libsigsegv-2.14-zuopqrik4y7vhqq2isjnr6mbixyks4uk from binary cache
==> libsigsegv: Successfully installed libsigsegv-2.14-zuopqrik4y7vhqq2isjnr6mbixyks4uk
Search: 0.00s. Fetch: 0.01s. Install: 0.02s. Extract: 0.01s. Relocate: 0.01s. Total: 0.03s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libsigsegv-2.14-zuopqrik4y7vhqq2isjnr6mbixyks4uk
==> Installing pkgconf-1.9.5-zjgtpdofa5acoyfs62cczvdj3gjngy3y [8/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-pkgconf-1.9.5-zjgtpdofa5acoyfs62cczvdj3gjngy3y.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/pkgconf-1.9.5/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-pkgconf-1.9.5-zjgtpdofa5acoyfs62cczvdj3gjngy3y.spack
==> Extracting pkgconf-1.9.5-zjgtpdofa5acoyfs62cczvdj3gjngy3y from binary cache
==> pkgconf: Successfully installed pkgconf-1.9.5-zjgtpdofa5acoyfs62cczvdj3gjngy3y
Search: 0.00s. Fetch: 0.01s. Install: 0.03s. Extract: 0.02s. Relocate: 0.01s. Total: 0.04s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/pkgconf-1.9.5-zjgtpdofa5acoyfs62cczvdj3gjngy3y
==> Installing libiconv-1.17-ivn4eq42mmvco5l3drcxjzbmpto5nfi2 [9/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libiconv-1.17-ivn4eq42mmvco5l3drcxjzbmpto5nfi2.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libiconv-1.17/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libiconv-1.17-ivn4eq42mmvco5l3drcxjzbmpto5nfi2.spack
==> Extracting libiconv-1.17-ivn4eq42mmvco5l3drcxjzbmpto5nfi2 from binary cache
==> libiconv: Successfully installed libiconv-1.17-ivn4eq42mmvco5l3drcxjzbmpto5nfi2
Search: 0.00s. Fetch: 0.01s. Install: 0.09s. Extract: 0.07s. Relocate: 0.01s. Total: 0.10s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libiconv-1.17-ivn4eq42mmvco5l3drcxjzbmpto5nfi2
==> Installing xz-5.4.1-axxqoeqv4lckdxrkvdp6f376ndmade4c [10/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-xz-5.4.1-axxqoeqv4lckdxrkvdp6f376ndmade4c.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/xz-5.4.1/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-xz-5.4.1-axxqoeqv4lckdxrkvdp6f376ndmade4c.spack
==> Extracting xz-5.4.1-axxqoeqv4lckdxrkvdp6f376ndmade4c from binary cache
==> xz: Successfully installed xz-5.4.1-axxqoeqv4lckdxrkvdp6f376ndmade4c
Search: 0.00s. Fetch: 0.01s. Install: 0.10s. Extract: 0.09s. Relocate: 0.01s. Total: 0.12s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/xz-5.4.1-axxqoeqv4lckdxrkvdp6f376ndmade4c
==> Installing util-macros-1.19.3-b7j7735jjga7hkzuwzrwvzqnatlld2nb [11/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-util-macros-1.19.3-b7j7735jjga7hkzuwzrwvzqnatlld2nb.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/util-macros-1.19.3/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-util-macros-1.19.3-b7j7735jjga7hkzuwzrwvzqnatlld2nb.spack
==> Extracting util-macros-1.19.3-b7j7735jjga7hkzuwzrwvzqnatlld2nb from binary cache
==> util-macros: Successfully installed util-macros-1.19.3-b7j7735jjga7hkzuwzrwvzqnatlld2nb
Search: 0.00s. Fetch: 0.01s. Install: 0.02s. Extract: 0.01s. Relocate: 0.01s. Total: 0.03s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/util-macros-1.19.3-b7j7735jjga7hkzuwzrwvzqnatlld2nb
==> Installing pigz-2.7-catlxmodt7sirns2di5pod576omq32hk [12/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-pigz-2.7-catlxmodt7sirns2di5pod576omq32hk.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/pigz-2.7/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-pigz-2.7-catlxmodt7sirns2di5pod576omq32hk.spack
==> Extracting pigz-2.7-catlxmodt7sirns2di5pod576omq32hk from binary cache
==> pigz: Successfully installed pigz-2.7-catlxmodt7sirns2di5pod576omq32hk
Search: 0.00s. Fetch: 0.01s. Install: 0.02s. Extract: 0.01s. Relocate: 0.01s. Total: 0.03s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/pigz-2.7-catlxmodt7sirns2di5pod576omq32hk
==> Installing nghttp2-1.57.0-my64owhngq5r4nl2lpysh2skvrq3nlo5 [13/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-nghttp2-1.57.0-my64owhngq5r4nl2lpysh2skvrq3nlo5.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/nghttp2-1.57.0/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-nghttp2-1.57.0-my64owhngq5r4nl2lpysh2skvrq3nlo5.spack
==> Extracting nghttp2-1.57.0-my64owhngq5r4nl2lpysh2skvrq3nlo5 from binary cache
==> nghttp2: Successfully installed nghttp2-1.57.0-my64owhngq5r4nl2lpysh2skvrq3nlo5
Search: 0.00s. Fetch: 0.01s. Install: 0.04s. Extract: 0.03s. Relocate: 0.01s. Total: 0.04s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/nghttp2-1.57.0-my64owhngq5r4nl2lpysh2skvrq3nlo5
==> Installing ncurses-6.4-qqlh6asufg6vhjnkbhwxl3jmocyolykt [14/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-ncurses-6.4-qqlh6asufg6vhjnkbhwxl3jmocyolykt.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/ncurses-6.4/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-ncurses-6.4-qqlh6asufg6vhjnkbhwxl3jmocyolykt.spack
==> Extracting ncurses-6.4-qqlh6asufg6vhjnkbhwxl3jmocyolykt from binary cache
==> ncurses: Successfully installed ncurses-6.4-qqlh6asufg6vhjnkbhwxl3jmocyolykt
Search: 0.00s. Fetch: 0.02s. Install: 0.77s. Extract: 0.75s. Relocate: 0.02s. Total: 0.79s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/ncurses-6.4-qqlh6asufg6vhjnkbhwxl3jmocyolykt
==> Installing diffutils-3.9-ueheij3wbhepmelnkti3jsglzzknb4en [15/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-diffutils-3.9-ueheij3wbhepmelnkti3jsglzzknb4en.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/diffutils-3.9/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-diffutils-3.9-ueheij3wbhepmelnkti3jsglzzknb4en.spack
==> Extracting diffutils-3.9-ueheij3wbhepmelnkti3jsglzzknb4en from binary cache
==> diffutils: Successfully installed diffutils-3.9-ueheij3wbhepmelnkti3jsglzzknb4en
Search: 0.00s. Fetch: 0.01s. Install: 0.08s. Extract: 0.07s. Relocate: 0.01s. Total: 0.09s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/diffutils-3.9-ueheij3wbhepmelnkti3jsglzzknb4en
==> Installing libxml2-2.10.3-67qoxbv3pyyep745wytvlgnnosn6pwnr [16/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libxml2-2.10.3-67qoxbv3pyyep745wytvlgnnosn6pwnr.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libxml2-2.10.3/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libxml2-2.10.3-67qoxbv3pyyep745wytvlgnnosn6pwnr.spack
==> Extracting libxml2-2.10.3-67qoxbv3pyyep745wytvlgnnosn6pwnr from binary cache
==> libxml2: Successfully installed libxml2-2.10.3-67qoxbv3pyyep745wytvlgnnosn6pwnr
Search: 0.00s. Fetch: 0.01s. Install: 0.14s. Extract: 0.12s. Relocate: 0.02s. Total: 0.15s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libxml2-2.10.3-67qoxbv3pyyep745wytvlgnnosn6pwnr
==> Installing readline-8.2-xxgqlmjyegrwwuq2pq4zaq7y6qojp3mz [17/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-readline-8.2-xxgqlmjyegrwwuq2pq4zaq7y6qojp3mz.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/readline-8.2/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-readline-8.2-xxgqlmjyegrwwuq2pq4zaq7y6qojp3mz.spack
==> Extracting readline-8.2-xxgqlmjyegrwwuq2pq4zaq7y6qojp3mz from binary cache
==> readline: Successfully installed readline-8.2-xxgqlmjyegrwwuq2pq4zaq7y6qojp3mz
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/readline-8.2-xxgqlmjyegrwwuq2pq4zaq7y6qojp3mz
==> Installing libedit-3.1-20210216-s4kq4wo6ii3vt3s354agguqm462yu32q [18/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libedit-3.1-20210216-s4kq4wo6ii3vt3s354agguqm462yu32q.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libedit-3.1-20210216/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libedit-3.1-20210216-s4kq4wo6ii3vt3s354agguqm462yu32q.spack
==> Extracting libedit-3.1-20210216-s4kq4wo6ii3vt3s354agguqm462yu32q from binary cache
==> libedit: Successfully installed libedit-3.1-20210216-s4kq4wo6ii3vt3s354agguqm462yu32q
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libedit-3.1-20210216-s4kq4wo6ii3vt3s354agguqm462yu32q
==> Installing m4-1.4.19-jnv5nut43juhm7esjn3tvxas6m67zbx4 [19/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-m4-1.4.19-jnv5nut43juhm7esjn3tvxas6m67zbx4.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/m4-1.4.19/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-m4-1.4.19-jnv5nut43juhm7esjn3tvxas6m67zbx4.spack
==> Extracting m4-1.4.19-jnv5nut43juhm7esjn3tvxas6m67zbx4 from binary cache
==> m4: Successfully installed m4-1.4.19-jnv5nut43juhm7esjn3tvxas6m67zbx4
Search: 0.00s. Fetch: 0.01s. Install: 0.06s. Extract: 0.04s. Relocate: 0.01s. Total: 0.07s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/m4-1.4.19-jnv5nut43juhm7esjn3tvxas6m67zbx4
==> Installing bzip2-1.0.8-4oz3kpfibmlvfizzivudj7pnzm2w7ce7 [20/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-bzip2-1.0.8-4oz3kpfibmlvfizzivudj7pnzm2w7ce7.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/bzip2-1.0.8/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-bzip2-1.0.8-4oz3kpfibmlvfizzivudj7pnzm2w7ce7.spack
==> Extracting bzip2-1.0.8-4oz3kpfibmlvfizzivudj7pnzm2w7ce7 from binary cache
==> bzip2: Successfully installed bzip2-1.0.8-4oz3kpfibmlvfizzivudj7pnzm2w7ce7
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/bzip2-1.0.8-4oz3kpfibmlvfizzivudj7pnzm2w7ce7
==> Installing gdbm-1.23-m626hzwxamau2a4cbu2hptq477qnufc4 [21/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-gdbm-1.23-m626hzwxamau2a4cbu2hptq477qnufc4.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/gdbm-1.23/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-gdbm-1.23-m626hzwxamau2a4cbu2hptq477qnufc4.spack
==> Extracting gdbm-1.23-m626hzwxamau2a4cbu2hptq477qnufc4 from binary cache
==> gdbm: Successfully installed gdbm-1.23-m626hzwxamau2a4cbu2hptq477qnufc4
Search: 0.00s. Fetch: 0.01s. Install: 0.06s. Extract: 0.04s. Relocate: 0.01s. Total: 0.07s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/gdbm-1.23-m626hzwxamau2a4cbu2hptq477qnufc4
==> Installing libtool-2.4.7-rgag55hxbjmkoqpx4gnr2golz2zfyvnt [22/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libtool-2.4.7-rgag55hxbjmkoqpx4gnr2golz2zfyvnt.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libtool-2.4.7/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libtool-2.4.7-rgag55hxbjmkoqpx4gnr2golz2zfyvnt.spack
==> Extracting libtool-2.4.7-rgag55hxbjmkoqpx4gnr2golz2zfyvnt from binary cache
==> libtool: Successfully installed libtool-2.4.7-rgag55hxbjmkoqpx4gnr2golz2zfyvnt
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libtool-2.4.7-rgag55hxbjmkoqpx4gnr2golz2zfyvnt
==> Installing tar-1.34-vdb3ozocdu73c4gl45gnzcjgscfye6mg [23/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-tar-1.34-vdb3ozocdu73c4gl45gnzcjgscfye6mg.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/tar-1.34/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-tar-1.34-vdb3ozocdu73c4gl45gnzcjgscfye6mg.spack
==> Extracting tar-1.34-vdb3ozocdu73c4gl45gnzcjgscfye6mg from binary cache
==> tar: Successfully installed tar-1.34-vdb3ozocdu73c4gl45gnzcjgscfye6mg
Search: 0.00s. Fetch: 0.01s. Install: 0.11s. Extract: 0.09s. Relocate: 0.02s. Total: 0.13s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/tar-1.34-vdb3ozocdu73c4gl45gnzcjgscfye6mg
==> Installing perl-5.38.0-dg34i2ae7omo77k6ntqkb6zi76gmeava [24/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-perl-5.38.0-dg34i2ae7omo77k6ntqkb6zi76gmeava.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/perl-5.38.0/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-perl-5.38.0-dg34i2ae7omo77k6ntqkb6zi76gmeava.spack
==> Extracting perl-5.38.0-dg34i2ae7omo77k6ntqkb6zi76gmeava from binary cache
==> perl: Successfully installed perl-5.38.0-dg34i2ae7omo77k6ntqkb6zi76gmeava
Search: 0.00s. Fetch: 0.03s. Install: 0.75s. Extract: 0.65s. Relocate: 0.10s. Total: 0.79s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/perl-5.38.0-dg34i2ae7omo77k6ntqkb6zi76gmeava
==> Installing libpciaccess-0.17-af4bqq6hwe23ojn7i3o2n7ws2b7wu64m [25/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libpciaccess-0.17-af4bqq6hwe23ojn7i3o2n7ws2b7wu64m.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libpciaccess-0.17/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libpciaccess-0.17-af4bqq6hwe23ojn7i3o2n7ws2b7wu64m.spack
==> Extracting libpciaccess-0.17-af4bqq6hwe23ojn7i3o2n7ws2b7wu64m from binary cache
==> libpciaccess: Successfully installed libpciaccess-0.17-af4bqq6hwe23ojn7i3o2n7ws2b7wu64m
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libpciaccess-0.17-af4bqq6hwe23ojn7i3o2n7ws2b7wu64m
==> Installing gettext-0.22.3-y26lmloj3u6romzd6j3xdfiib7gnkbga [26/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-gettext-0.22.3-y26lmloj3u6romzd6j3xdfiib7gnkbga.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/gettext-0.22.3/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-gettext-0.22.3-y26lmloj3u6romzd6j3xdfiib7gnkbga.spack
==> Extracting gettext-0.22.3-y26lmloj3u6romzd6j3xdfiib7gnkbga from binary cache
==> gettext: Successfully installed gettext-0.22.3-y26lmloj3u6romzd6j3xdfiib7gnkbga
Search: 0.00s. Fetch: 0.02s. Install: 0.67s. Extract: 0.62s. Relocate: 0.04s. Total: 0.69s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/gettext-0.22.3-y26lmloj3u6romzd6j3xdfiib7gnkbga
==> Installing autoconf-2.69-mnfnoa5qnshe7gdq7gnlkwowqxyrymia [27/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-autoconf-2.69-mnfnoa5qnshe7gdq7gnlkwowqxyrymia.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/autoconf-2.69/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-autoconf-2.69-mnfnoa5qnshe7gdq7gnlkwowqxyrymia.spack
==> Extracting autoconf-2.69-mnfnoa5qnshe7gdq7gnlkwowqxyrymia from binary cache
==> autoconf: Successfully installed autoconf-2.69-mnfnoa5qnshe7gdq7gnlkwowqxyrymia
Search: 0.00s. Fetch: 0.01s. Install: 0.07s. Extract: 0.04s. Relocate: 0.02s. Total: 0.07s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/autoconf-2.69-mnfnoa5qnshe7gdq7gnlkwowqxyrymia
==> Installing libxcrypt-4.4.35-hezcx7ggdisbf6oqol5ucfch7emlggqk [28/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libxcrypt-4.4.35-hezcx7ggdisbf6oqol5ucfch7emlggqk.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libxcrypt-4.4.35/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libxcrypt-4.4.35-hezcx7ggdisbf6oqol5ucfch7emlggqk.spack
==> Extracting libxcrypt-4.4.35-hezcx7ggdisbf6oqol5ucfch7emlggqk from binary cache
==> libxcrypt: Successfully installed libxcrypt-4.4.35-hezcx7ggdisbf6oqol5ucfch7emlggqk
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libxcrypt-4.4.35-hezcx7ggdisbf6oqol5ucfch7emlggqk
==> Installing openssl-3.1.3-35j7wvrf3jovxokjkzdrpv265sfrjwga [29/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-openssl-3.1.3-35j7wvrf3jovxokjkzdrpv265sfrjwga.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/openssl-3.1.3/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-openssl-3.1.3-35j7wvrf3jovxokjkzdrpv265sfrjwga.spack
==> Extracting openssl-3.1.3-35j7wvrf3jovxokjkzdrpv265sfrjwga from binary cache
==> openssl: Successfully installed openssl-3.1.3-35j7wvrf3jovxokjkzdrpv265sfrjwga
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/openssl-3.1.3-35j7wvrf3jovxokjkzdrpv265sfrjwga
==> Installing hwloc-2.9.1-dyrsjedv3fxwdi3sutxieq2rcz4etdib [30/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-hwloc-2.9.1-dyrsjedv3fxwdi3sutxieq2rcz4etdib.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/hwloc-2.9.1/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-hwloc-2.9.1-dyrsjedv3fxwdi3sutxieq2rcz4etdib.spack
==> Extracting hwloc-2.9.1-dyrsjedv3fxwdi3sutxieq2rcz4etdib from binary cache
==> hwloc: Successfully installed hwloc-2.9.1-dyrsjedv3fxwdi3sutxieq2rcz4etdib
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/hwloc-2.9.1-dyrsjedv3fxwdi3sutxieq2rcz4etdib
==> Installing bison-3.8.2-lza42n2wukvkldw6vcrp3iwpvw7d6oni [31/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-bison-3.8.2-lza42n2wukvkldw6vcrp3iwpvw7d6oni.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/bison-3.8.2/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-bison-3.8.2-lza42n2wukvkldw6vcrp3iwpvw7d6oni.spack
==> Extracting bison-3.8.2-lza42n2wukvkldw6vcrp3iwpvw7d6oni from binary cache
==> bison: Successfully installed bison-3.8.2-lza42n2wukvkldw6vcrp3iwpvw7d6oni
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/bison-3.8.2-lza42n2wukvkldw6vcrp3iwpvw7d6oni
==> Installing automake-1.16.5-d3cncglfvi2mpx7ytpfqnleyc233qcej [32/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-automake-1.16.5-d3cncglfvi2mpx7ytpfqnleyc233qcej.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/automake-1.16.5/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-automake-1.16.5-d3cncglfvi2mpx7ytpfqnleyc233qcej.spack
==> Extracting automake-1.16.5-d3cncglfvi2mpx7ytpfqnleyc233qcej from binary cache
==> automake: Successfully installed automake-1.16.5-d3cncglfvi2mpx7ytpfqnleyc233qcej
Search: 0.00s. Fetch: 0.01s. Install: 0.09s. Extract: 0.06s. Relocate: 0.03s. Total: 0.10s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/automake-1.16.5-d3cncglfvi2mpx7ytpfqnleyc233qcej
==> Installing curl-8.4.0-ijsmc3jx2cjmdy2svodqqkeimkooheod [33/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-curl-8.4.0-ijsmc3jx2cjmdy2svodqqkeimkooheod.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/curl-8.4.0/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-curl-8.4.0-ijsmc3jx2cjmdy2svodqqkeimkooheod.spack
==> Extracting curl-8.4.0-ijsmc3jx2cjmdy2svodqqkeimkooheod from binary cache
==> curl: Successfully installed curl-8.4.0-ijsmc3jx2cjmdy2svodqqkeimkooheod
Search: 0.00s. Fetch: 0.01s. Install: 0.16s. Extract: 0.13s. Relocate: 0.02s. Total: 0.17s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/curl-8.4.0-ijsmc3jx2cjmdy2svodqqkeimkooheod
==> Installing krb5-1.20.1-tjiqlymlbmjxyyvwlkumu4qq65nuqr3w [34/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-krb5-1.20.1-tjiqlymlbmjxyyvwlkumu4qq65nuqr3w.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/krb5-1.20.1/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-krb5-1.20.1-tjiqlymlbmjxyyvwlkumu4qq65nuqr3w.spack
==> Extracting krb5-1.20.1-tjiqlymlbmjxyyvwlkumu4qq65nuqr3w from binary cache
==> krb5: Successfully installed krb5-1.20.1-tjiqlymlbmjxyyvwlkumu4qq65nuqr3w
Search: 0.00s. Fetch: 0.01s. Install: 0.19s. Extract: 0.13s. Relocate: 0.05s. Total: 0.20s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/krb5-1.20.1-tjiqlymlbmjxyyvwlkumu4qq65nuqr3w
==> Installing numactl-2.0.14-mbwdizyinycylldk4lrjvq2y474cd5bk [35/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-numactl-2.0.14-mbwdizyinycylldk4lrjvq2y474cd5bk.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/numactl-2.0.14/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-numactl-2.0.14-mbwdizyinycylldk4lrjvq2y474cd5bk.spack
==> Extracting numactl-2.0.14-mbwdizyinycylldk4lrjvq2y474cd5bk from binary cache
==> numactl: Successfully installed numactl-2.0.14-mbwdizyinycylldk4lrjvq2y474cd5bk
Search: 0.00s. Fetch: 0.01s. Install: 0.05s. Extract: 0.03s. Relocate: 0.01s. Total: 0.06s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/numactl-2.0.14-mbwdizyinycylldk4lrjvq2y474cd5bk
==> Installing libevent-2.1.12-wpvxxkafb3j7uc465iekvpyhew3brhl7 [36/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libevent-2.1.12-wpvxxkafb3j7uc465iekvpyhew3brhl7.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libevent-2.1.12/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-libevent-2.1.12-wpvxxkafb3j7uc465iekvpyhew3brhl7.spack
==> Extracting libevent-2.1.12-wpvxxkafb3j7uc465iekvpyhew3brhl7 from binary cache
==> libevent: Successfully installed libevent-2.1.12-wpvxxkafb3j7uc465iekvpyhew3brhl7
Search: 0.00s. Fetch: 0.01s. Install: 0.12s. Extract: 0.10s. Relocate: 0.02s. Total: 0.14s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/libevent-2.1.12-wpvxxkafb3j7uc465iekvpyhew3brhl7
==> Installing cmake-3.27.7-kd6xihnhlzyfwafeilow6t2mvolyryor [37/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-cmake-3.27.7-kd6xihnhlzyfwafeilow6t2mvolyryor.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/cmake-3.27.7/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-cmake-3.27.7-kd6xihnhlzyfwafeilow6t2mvolyryor.spack
==> Extracting cmake-3.27.7-kd6xihnhlzyfwafeilow6t2mvolyryor from binary cache
==> cmake: Successfully installed cmake-3.27.7-kd6xihnhlzyfwafeilow6t2mvolyryor
Search: 0.00s. Fetch: 0.05s. Install: 1.20s. Extract: 1.11s. Relocate: 0.08s. Total: 1.25s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/cmake-3.27.7-kd6xihnhlzyfwafeilow6t2mvolyryor
==> Installing openssh-9.5p1-zjwxy3znkrc3yslkm3eoyewet5bxacjc [38/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-openssh-9.5p1-zjwxy3znkrc3yslkm3eoyewet5bxacjc.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/openssh-9.5p1/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-openssh-9.5p1-zjwxy3znkrc3yslkm3eoyewet5bxacjc.spack
==> Extracting openssh-9.5p1-zjwxy3znkrc3yslkm3eoyewet5bxacjc from binary cache
==> openssh: Successfully installed openssh-9.5p1-zjwxy3znkrc3yslkm3eoyewet5bxacjc
Search: 0.00s. Fetch: 0.01s. Install: 0.22s. Extract: 0.08s. Relocate: 0.13s. Total: 0.23s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/openssh-9.5p1-zjwxy3znkrc3yslkm3eoyewet5bxacjc
==> Installing pmix-5.0.1-fhkyvm3nsv5cjxhfszdx2y3rieh274vn [39/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-pmix-5.0.1-fhkyvm3nsv5cjxhfszdx2y3rieh274vn.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/pmix-5.0.1/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-pmix-5.0.1-fhkyvm3nsv5cjxhfszdx2y3rieh274vn.spack
==> Extracting pmix-5.0.1-fhkyvm3nsv5cjxhfszdx2y3rieh274vn from binary cache
==> pmix: Successfully installed pmix-5.0.1-fhkyvm3nsv5cjxhfszdx2y3rieh274vn
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/pmix-5.0.1-fhkyvm3nsv5cjxhfszdx2y3rieh274vn
==> Installing openmpi-4.1.6-z4iqm7nipxsdam3chio7r74ob3cznoof [40/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-openmpi-4.1.6-z4iqm7nipxsdam3chio7r74ob3cznoof.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/openmpi-4.1.6/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-openmpi-4.1.6-z4iqm7nipxsdam3chio7r74ob3cznoof.spack
==> Extracting openmpi-4.1.6-z4iqm7nipxsdam3chio7r74ob3cznoof from binary cache
==> openmpi: Successfully installed openmpi-4.1.6-z4iqm7nipxsdam3chio7r74ob3cznoof
Search: 0.00s. Fetch: 0.02s. Install: 0.39s. Extract: 0.35s. Relocate: 0.03s. Total: 0.41s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/openmpi-4.1.6-z4iqm7nipxsdam3chio7r74ob3cznoof
==> Installing hdf5-1.14.3-7eeohwaegvx2xa3ybcdsont2qmllii2i [41/41]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-hdf5-1.14.3-7eeohwaegvx2xa3ybcdsont2qmllii2i.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/hdf5-1.14.3/linux-ubuntu22.04-x86_64_v3-gcc-11.4.0-hdf5-1.14.3-7eeohwaegvx2xa3ybcdsont2qmllii2i.spack
==> Extracting hdf5-1.14.3-7eeohwaegvx2xa3ybcdsont2qmllii2i from binary cache
==> hdf5: Successfully installed hdf5-1.14.3-7eeohwaegvx2xa3ybcdsont2qmllii2i
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/gcc-11.4.0/hdf5-1.14.3-7eeohwaegvx2xa3ybcdsont2qmllii2i
$ spack install zlib%clang
==> Installing gmake-4.4.1-d54pflh3qlovydzjgff55nvzxtqedobt [1/2]
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3-clang-14.0.0-gmake-4.4.1-d54pflh3qlovydzjgff55nvzxtqedobt.spec.json.sig
==> Fetching file:///mirror/build_cache/linux-ubuntu22.04-x86_64_v3/clang-14.0.0/gmake-4.4.1/linux-ubuntu22.04-x86_64_v3-clang-14.0.0-gmake-4.4.1-d54pflh3qlovydzjgff55nvzxtqedobt.spack
==> Extracting gmake-4.4.1-d54pflh3qlovydzjgff55nvzxtqedobt from binary cache
==> gmake: Successfully installed gmake-4.4.1-d54pflh3qlovydzjgff55nvzxtqedobt
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[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/clang-14.0.0/gmake-4.4.1-d54pflh3qlovydzjgff55nvzxtqedobt
==> Installing zlib-1.3-goe4uiyagvbzjza6d65dpdrdqyxjtb56 [2/2]
==> No binary for zlib-1.3-goe4uiyagvbzjza6d65dpdrdqyxjtb56 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/ff/ff0ba4c292013dbc27530b3a81e1f9a813cd39de01ca5e0f8bf355702efa593e.tar.gz
==> No patches needed for zlib
==> zlib: Executing phase: 'edit'
==> zlib: Executing phase: 'build'
==> zlib: Executing phase: 'install'
==> zlib: Successfully installed zlib-1.3-goe4uiyagvbzjza6d65dpdrdqyxjtb56
Stage: 0.12s. Edit: 0.70s. Build: 1.09s. Install: 0.07s. Post-install: 0.01s. Total: 2.07s
[+] /home/spack/spack/opt/spack/linux-ubuntu22.04-x86_64_v3/clang-14.0.0/zlib-1.3-goe4uiyagvbzjza6d65dpdrdqyxjtb56
Now we are ready to use the Spack’s find and python subcommands
to query the installed packages.
Scripting with spack find
So far, the output we’ve seen from spack find has been for human
consumption. But you can take advantage of some advanced options of
the command to generate machine-readable output suitable for piping
to a script.
spack find --format
The main job of spack find is to show the user a bunch of concrete
specs that correspond to installed packages. By default, we display them
with some default attributes, like the @version suffix you’re used to
seeing in the output.
The --format argument allows you to display the specs however you
choose, using custom format strings. Format strings let you specify the
names of particular parts of the specs you want displayed. Let’s see
the first option in action.
Suppose you only want to display the name, version, and first ten (10) characters of the hash for every package installed in your Spack instance. You can generate that output with the following command:
$ spack find --format "{name} {version} {hash:10}"
autoconf 2.69 mnfnoa5qns libtool 2.4.7 rgag55hxbj
automake 1.16.5 d3cncglfvi libxcrypt 4.4.35 hezcx7ggdi
berkeley-db 18.1.40 ku7makqmto libxml2 2.10.3 67qoxbv3py
bison 3.8.2 lza42n2wuk m4 1.4.19 jnv5nut43j
bzip2 1.0.8 4oz3kpfibm ncurses 6.4 qqlh6asufg
ca-certificates-mozilla 2023-05-30 ct4al4udow nghttp2 1.57.0 my64owhngq
cmake 3.27.7 kd6xihnhlz numactl 2.0.14 mbwdizyiny
curl 8.4.0 ijsmc3jx2c openmpi 4.1.6 z4iqm7nipx
diffutils 3.9 ueheij3wbh openssh 9.5p1 zjwxy3znkr
findutils 4.9.0 cws3eftnvf openssl 3.1.3 35j7wvrf3j
gdbm 1.23 m626hzwxam perl 5.38.0 dg34i2ae7o
gettext 0.22.3 y26lmloj3u pigz 2.7 catlxmodt7
gmake 4.4.1 d54pflh3ql pkgconf 1.9.5 zjgtpdofa5
gmake 4.4.1 znvoaniggv pmix 5.0.1 fhkyvm3nsv
hdf5 1.14.3 7eeohwaegv readline 8.2 xxgqlmjyeg
hwloc 2.9.1 dyrsjedv3f tar 1.34 vdb3ozocdu
krb5 1.20.1 tjiqlymlbm util-macros 1.19.3 b7j7735jjg
libedit 3.1-20210216 s4kq4wo6ii xz 5.4.1 axxqoeqv4l
libevent 2.1.12 wpvxxkafb3 zlib 1.3 goe4uiyagv
libiconv 1.17 ivn4eq42mm zlib-ng 2.1.4 5xcetrvs3f
libpciaccess 0.17 af4bqq6hwe zstd 1.5.5 jkznmrmqdg
libsigsegv 2.14 zuopqrik4y
Note that name, version, and hash are attributes of Spack’s
internal Spec object and enclosing them in braces ensures they are
output according to your format string.
Using spack find --format allows you to retrieve just the information
you need to do things like pipe the output to typical UNIX command-line
tools like sort or uniq.
spack find --json
Alternatively, you can get a serialized version of Spec objects in
the JSON format using the --json option. For example, you can
get attributes for all installations of zlib by entering:
$ spack find --json zlib
The spack find --json command gives you everything we know about
the specs in a structured format. You can pipe its output to
JSON filtering tools like jq to extract just the parts you want.
Check out the basic usage docs for more examples.
Introducing the spack python command
What if we need to perform more advanced queries?
Spack provides the spack python command to launch a python interpreter
with Spack’s python modules available to import. It uses the underlying
python for the rest of its commands. So you can write scripts to:
run Spack commands;
explore abstract and concretized specs; and
directly access other internal components of Spack.
Let’s launch a Spack-aware python interpreter by entering:
$ spack python
exit()
Spack version 0.21.0
Python 3.11.6, Linux x86_64
>>> exit()
Since we are in a python interpreter, use exit() to end
the session and return to the terminal.
Accessing the Spec object
Now let’s take a look at the internal representation of the Spack Spec.
As you already know, specs can be either abstract or concrete. The
specs you’ve seen in package.py files (e.g., in the install()
method) have been concrete, or fully specified. The specs you’ve typed
on the command line have been abstract. Understanding the differences
between the two types is key to using Spack’s internal API.
Let’s open another python interpreter with spack python, instantiate
the zlib spec, and check a few properties of an abstract spec:
>>> from spack.spec import Spec
>>> s = Spec('zlib target=x86_64_v3')
>>> s.concrete
False
>>> s.version
Traceback (most recent call last):
File "<console>", line 1, in <module>
File "/home/spack/spack/lib/spack/spack/spec.py", line 3166, in version
raise SpecError("Spec version is not concrete: " + str(self))
SpecError: Spec version is not concrete: zlib arch=None-None-x86_64_v3
>>> s.versions
[:]
>>> str(s.architecture)
None-None-x86_64_v3
Notice that there are Spec properties and methods that are not
accessible to abstract specs; specifically:
an exception –
SpecError– is raised if we try to access itsversion;there are no associated
versions; andthe spec’s operating system is
None.
Now, without exiting the interpreter, let’s concretize the spec and try again:
>>> s.concretize()
>>> s.concrete
True
>>> s.version
Version('1.3.1')
>>> s.versions
[Version('1.3.1')]
>>> str(s.architecture)
linux-ubuntu22.04-x86_64_v3
Notice that the concretized spec now:
has a
version;has a single entry in its
versionslist; andthe operating system is now
ubuntu22.04.
It is not necessary to store the intermediate abstract spec – you can
use the .concretized() method as shorthand:
>>> t = Spec('zlib target=x86_64_v3').concretized()
>>> s == t
True
Querying the Spack database
Even more powerful queries are available when we look at the information
stored in the Spack database. The Database object in Spack is in the
spack.store.STORE.db variable. We’ll interact with it mainly through the
query() method. Let’s see the documentation available for query()
using python’s built-in help() function:
>>> import spack.store
>>> help(spack.store.STORE.db.query)
Help on method query in module spack.database:
query(*args, **kwargs) method of spack.database.Database instance
Query the Spack database including all upstream databases.
Args:
query_spec: queries iterate through specs in the database and
return those that satisfy the supplied ``query_spec``. If
query_spec is `any`, This will match all specs in the
database. If it is a spec, we'll evaluate
``spec.satisfies(query_spec)``
known (bool or any, optional): Specs that are "known" are those
for which Spack can locate a ``package.py`` file -- i.e.,
Spack "knows" how to install them. Specs that are unknown may
represent packages that existed in a previous version of
Spack, but have since either changed their name or
been removed
installed (bool or any, or InstallStatus or iterable of
InstallStatus, optional): if ``True``, includes only installed
specs in the search; if ``False`` only missing specs, and if
``any``, all specs in database. If an InstallStatus or iterable
of InstallStatus, returns specs whose install status
(installed, deprecated, or missing) matches (one of) the
InstallStatus. (default: True)
explicit (bool or any, optional): A spec that was installed
following a specific user request is marked as explicit. If
instead it was pulled-in as a dependency of a user requested
spec it's considered implicit.
start_date (datetime, optional): filters the query discarding
specs that have been installed before ``start_date``.
end_date (datetime, optional): filters the query discarding
specs that have been installed after ``end_date``.
hashes (container): list or set of hashes that we can use to
restrict the search
Returns:
list of specs that match the query
(END)
We will primarily make use of the query_spec argument.
Recall that queries using the spack find command are limited to
queries of attributes with matching values, not values they do not
have. In other words, we cannot use the spack find command for
all packages that do not satisfy a certain criterion.
We can use the python interface to write these types of queries.
For example, let’s find all packages that were compiled with gcc but
do not depend on mpich. We can do this by using custom python code
and Spack database queries. We will use the spack.cmd.display_specs
for output to achieve the same printing functionality as the spack
find command:
>>> gcc_query_spec = Spec('%gcc')
>>> gcc_specs = spack.store.STORE.db.query(gcc_query_spec)
>>> result = filter(lambda spec: not spec.satisfies('^mpich'), gcc_specs)
>>> import spack.cmd
>>> spack.cmd.display_specs(result)
-- linux-ubuntu22.04-x86_64_v3 / gcc@11.4.0 -------------------------
autoconf@2.72 gdbm@1.23 libsigsegv@2.14 perl@5.38.0
automake@1.16.5 gettext@0.22.5 libtool@2.4.7 pigz@2.8
berkeley-db@18.1.40 glibc@2.35 libxcrypt@4.4.35 pkgconf@2.2.0
bison@3.8.2 gmake@4.4.1 libxml2@2.10.3 pmix@5.0.1
bzip2@1.0.8 hdf5@1.14.3 m4@1.4.19 readline@8.2
ca-certificates-mozilla@2023-05-30 hwloc@2.9.1 ncurses@6.5 tar@1.34
cmake@3.27.9 krb5@1.20.1 nghttp2@1.57.0 util-macros@1.19.3
curl@8.7.1 libedit@3.1-20230828 numactl@2.0.14 xz@5.4.6
diffutils@3.10 libevent@2.1.12 openmpi@5.0.3 zlib-ng@2.1.6
findutils@4.9.0 libiconv@1.17 openssh@9.7p1 zstd@1.5.6
gcc-runtime@11.4.0 libpciaccess@0.17 openssl@3.3.0
Now we have a powerful query not available through spack find.
Let’s exit the interpreter to take us back to the command line:
>>> exit()
before generalizing the functionality for reuse.
Using scripts
Now let’s parameterize our script to accept arguments on the command line. With a few generalizations to use the include and exclude specs as arguments, we can create a powerful, general-purpose query script.
Open a file called find_exclude.py in your preferred editor
and add the following code:
from spack.spec import Spec
import spack.store
import spack.cmd
import sys
include_spec = Spec(sys.argv[1])
exclude_spec = Spec(sys.argv[2])
all_included = spack.store.STORE.db.query(include_spec)
result = filter(lambda spec: not spec.satisfies(exclude_spec), all_included)
spack.cmd.display_specs(result)
Notice we added importing and using the system package (sys)
to access the first and second command line arguments.
Now we can run our new script by entering the following:
$ spack python find_exclude.py %gcc ^mpich
-- linux-ubuntu22.04-x86_64_v3 / gcc@11.4.0 ---------------------
autoconf@2.69 hwloc@2.9.1 openmpi@4.1.6
automake@1.16.5 krb5@1.20.1 openssh@9.5p1
berkeley-db@18.1.40 libedit@3.1-20210216 openssl@3.1.3
bison@3.8.2 libevent@2.1.12 perl@5.38.0
bzip2@1.0.8 libiconv@1.17 pigz@2.7
ca-certificates-mozilla@2023-05-30 libpciaccess@0.17 pkgconf@1.9.5
cmake@3.27.7 libsigsegv@2.14 pmix@5.0.1
curl@8.4.0 libtool@2.4.7 readline@8.2
diffutils@3.9 libxcrypt@4.4.35 tar@1.34
findutils@4.9.0 libxml2@2.10.3 util-macros@1.19.3
gdbm@1.23 m4@1.4.19 xz@5.4.1
gettext@0.22.3 ncurses@6.4 zlib-ng@2.1.4
gmake@4.4.1 nghttp2@1.57.0 zstd@1.5.5
hdf5@1.14.3 numactl@2.0.14
This is great for us, as long as we remember to use Spack’s
python command to run it.
Using the spack-python executable
What if we want to make our script available for others to use without
the hassle of having to remember to use spack python?
We can take advantage of the shebang line typically added as the first line of python executable files. But there is a catch, as we will soon see.
Open the find_exclude.py script we created above in your preferred
editor and add the shebang line with spack python as the arguments
to env:
#!/usr/bin/env spack-python
from spack.spec import Spec
import spack.store
import spack.cmd
import sys
include_spec = Spec(sys.argv[1])
exclude_spec = Spec(sys.argv[2])
all_included = spack.store.STORE.db.query(include_spec)
result = filter(lambda spec: not spec.satisfies(exclude_spec), all_included)
spack.cmd.display_specs(result)
Then exit our editor and add execute permissions to the script before running it as follows:
$ chmod u+x find_exclude.py
$ ./find_exclude.py %gcc ^mpich
-- linux-ubuntu22.04-x86_64_v3 / gcc@11.4.0 ---------------------
autoconf@2.69 hwloc@2.9.1 openmpi@4.1.6
automake@1.16.5 krb5@1.20.1 openssh@9.5p1
berkeley-db@18.1.40 libedit@3.1-20210216 openssl@3.1.3
bison@3.8.2 libevent@2.1.12 perl@5.38.0
bzip2@1.0.8 libiconv@1.17 pigz@2.7
ca-certificates-mozilla@2023-05-30 libpciaccess@0.17 pkgconf@1.9.5
cmake@3.27.7 libsigsegv@2.14 pmix@5.0.1
curl@8.4.0 libtool@2.4.7 readline@8.2
diffutils@3.9 libxcrypt@4.4.35 tar@1.34
findutils@4.9.0 libxml2@2.10.3 util-macros@1.19.3
gdbm@1.23 m4@1.4.19 xz@5.4.1
gettext@0.22.3 ncurses@6.4 zlib-ng@2.1.4
gmake@4.4.1 nghttp2@1.57.0 zstd@1.5.5
hdf5@1.14.3 numactl@2.0.14
If you are lucky, it worked on your system, but there is no guarantee.
Some systems only support a single argument on the shebang line (see
here).
spack-python, which is a wrapper script for spack python, solves
this issue.
Bring up the file in your editor again and change the env argument
to spack-python as follows:
#!/usr/bin/env spack-python
from spack.spec import Spec
import spack.store
import spack.cmd
import sys
include_spec = Spec(sys.argv[1])
exclude_spec = Spec(sys.argv[2])
all_included = spack.store.STORE.db.query(include_spec)
result = filter(lambda spec: not spec.satisfies(exclude_spec), all_included)
spack.cmd.display_specs(result)
Exit your editor and let’s run the script again:
$ ./find_exclude.py %gcc ^mpich
-- linux-ubuntu22.04-x86_64_v3 / gcc@11.4.0 ---------------------
autoconf@2.69 hwloc@2.9.1 openmpi@4.1.6
automake@1.16.5 krb5@1.20.1 openssh@9.5p1
berkeley-db@18.1.40 libedit@3.1-20210216 openssl@3.1.3
bison@3.8.2 libevent@2.1.12 perl@5.38.0
bzip2@1.0.8 libiconv@1.17 pigz@2.7
ca-certificates-mozilla@2023-05-30 libpciaccess@0.17 pkgconf@1.9.5
cmake@3.27.7 libsigsegv@2.14 pmix@5.0.1
curl@8.4.0 libtool@2.4.7 readline@8.2
diffutils@3.9 libxcrypt@4.4.35 tar@1.34
findutils@4.9.0 libxml2@2.10.3 util-macros@1.19.3
gdbm@1.23 m4@1.4.19 xz@5.4.1
gettext@0.22.3 ncurses@6.4 zlib-ng@2.1.4
gmake@4.4.1 nghttp2@1.57.0 zstd@1.5.5
hdf5@1.14.3 numactl@2.0.14
Congratulations! It will now work on any system with Spack installed.
You now have the basic tools to create your own custom Spack queries and prototype ideas. We hope one day you’ll contribute them back to Spack.